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- biocLite("S4Vectors")
- BioC_mirror: http://bioconductor.org
- Using Bioconductor version 3.1 (BiocInstaller 1.18.5), R version 3.2.2.
- Installing package(s) ‘S4Vectors’
- trying URL 'http://bioconductor.org/packages/3.1/bioc/src/contrib/S4Vectors_0.6.6.tar.gz'
- Content type 'application/x-gzip' length 188240 bytes (183 KB)
- ==================================================
- downloaded 183 KB
- * installing *source* package ‘S4Vectors’ ...
- ** libs
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c AEbufs.c -o AEbufs.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c DataFrame_class.c -o DataFrame_class.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Hits_class.c -o Hits_class.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c List_class.c -o List_class.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c R_init_S4Vectors.c -o R_init_S4Vectors.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rle_class.c -o Rle_class.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rle_utils.c -o Rle_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c SEXP_utils.c -o SEXP_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c SimpleList_class.c -o SimpleList_class.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eval_utils.c -o eval_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hash_utils.c -o hash_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c int_utils.c -o int_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c logical_utils.c -o logical_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c safe_arithm.c -o safe_arithm.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sort_utils.c -o sort_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c str_utils.c -o str_utils.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subsetting_internals.c -o subsetting_internals.o
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c vector_utils.c -o vector_utils.o
- gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o eval_utils.o hash_utils.o int_utils.o logical_utils.o safe_arithm.o sort_utils.o str_utils.o subsetting_internals.o vector_utils.o -L/usr/lib/R/lib -lR
- installing to /proj/p.arc/libs/r/S4Vectors/libs
- ** R
- ** inst
- ** preparing package for lazy loading
- Creating a generic function for ‘subset’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘na.omit’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘na.exclude’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘transform’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘merge’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘by’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘window’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘head’ from package ‘utils’ in package ‘S4Vectors’
- Creating a generic function for ‘tail’ from package ‘utils’ in package ‘S4Vectors’
- Creating a generic function for ‘with’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘%in%’ from package ‘base’ in package ‘S4Vectors’
- Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’
- Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘as.table’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘t’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘rev’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘which’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘which.max’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘diff’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘mean’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘var’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘sd’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘median’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘mad’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘IQR’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’
- Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘levels’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘droplevels’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘within’ from package ‘base’ in package ‘S4Vectors’
- Creating a generic function for ‘aggregate’ from package ‘stats’ in package ‘S4Vectors’
- ** help
- *** installing help indices
- ** building package indices
- ** installing vignettes
- ** testing if installed package can be loaded
- Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ <<-- WHY HERE
- * DONE (S4Vectors)
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