compile:
    [mkdir] Created dir: /vol/R/rguha/cdkr/rcdkjar/classes
    [javac] org/guha/rcdk/app/OSXHelper.java added as org/guha/rcdk/app/OSXHelper.class doesn't exist.
    [javac] org/guha/rcdk/descriptors/DescriptorUtilities.java added as org/guha/rcdk/descriptors/DescriptorUtilities.class doesn't exist.
    [javac] org/guha/rcdk/formula/FormulaTools.java added as org/guha/rcdk/formula/FormulaTools.class doesn't exist.
    [javac] org/guha/rcdk/util/Misc.java added as org/guha/rcdk/util/Misc.class doesn't exist.
    [javac] org/guha/rcdk/util/TablePacker.java added as org/guha/rcdk/util/TablePacker.class doesn't exist.
    [javac] org/guha/rcdk/view/MoleculeDisplay.java added as org/guha/rcdk/view/MoleculeDisplay.class doesn't exist.
    [javac] org/guha/rcdk/view/MoleculeImage.java added as org/guha/rcdk/view/MoleculeImage.class doesn't exist.
    [javac] org/guha/rcdk/view/MoleculeImageToClipboard.java added as org/guha/rcdk/view/MoleculeImageToClipboard.class doesn't exist.
    [javac] org/guha/rcdk/view/ViewMolecule2D.java added as org/guha/rcdk/view/ViewMolecule2D.class doesn't exist.
    [javac] org/guha/rcdk/view/ViewMolecule2DDataTable.java added as org/guha/rcdk/view/ViewMolecule2DDataTable.class doesn't exist.
    [javac] org/guha/rcdk/view/ViewMolecule2DTable.java added as org/guha/rcdk/view/ViewMolecule2DTable.class doesn't exist.
    [javac] org/guha/rcdk/view/panels/MoleculeCell.java added as org/guha/rcdk/view/panels/MoleculeCell.class doesn't exist.
    [javac] org/guha/rcdk/view/table/MyTable.java added as org/guha/rcdk/view/table/MyTable.class doesn't exist.
    [javac] org/guha/rcdk/view/table/StructureTableCellEditor.java added as org/guha/rcdk/view/table/StructureTableCellEditor.class doesn't exist.
    [javac] org/guha/rcdk/view/table/StructureTableCellEditor2D.java added as org/guha/rcdk/view/table/StructureTableCellEditor2D.class doesn't exist.
    [javac] org/guha/rcdk/view/table/StructureTableCellRenderer2D.java added as org/guha/rcdk/view/table/StructureTableCellRenderer2D.class doesn't exist.
    [javac] org/guha/rcdk/view/table/StructureTableModel.java added as org/guha/rcdk/view/table/StructureTableModel.class doesn't exist.
    [javac] Compiling 17 source files to /vol/R/rguha/cdkr/rcdkjar/classes
    [javac] Using modern compiler
    [javac] Compilation arguments:
    [javac] '-d'
    [javac] '/vol/R/rguha/cdkr/rcdkjar/classes'
    [javac] '-classpath'
    [javac] '/vol/R/rguha/cdkr/rcdkjar/classes:/vol/R/rguha/cdkr/rcdkjar/jars/cdk-git-20140208.jar:/vol/R/rguha/cdkr/rcdkjar/jars/com.objectplanet.image.PngEncoder.jar:/vol/R/rguha/cdkr/rcdkjar/jars/junit.jar'
    [javac] '-sourcepath'
    [javac] '/vol/R/rguha/cdkr/rcdkjar/src'
    [javac] '-g'
    [javac] '-source'
    [javac] '1.5'
    [javac]
    [javac] The ' characters around the executable and arguments are
    [javac] not part of the command.
    [javac] Files to be compiled:
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/app/OSXHelper.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/descriptors/DescriptorUtilities.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/formula/FormulaTools.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/util/Misc.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/util/TablePacker.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/MoleculeDisplay.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/MoleculeImage.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/MoleculeImageToClipboard.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/ViewMolecule2D.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/ViewMolecule2DDataTable.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/ViewMolecule2DTable.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/panels/MoleculeCell.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/table/MyTable.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/table/StructureTableCellEditor.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/table/StructureTableCellEditor2D.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/table/StructureTableCellRenderer2D.java
    [javac]     /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/view/table/StructureTableModel.java
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5
    [javac] /vol/R/rguha/cdkr/rcdkjar/src/org/guha/rcdk/util/Misc.java:188: error: cannot find symbol
    [javac]             IsotopeFactory ifac = IsotopeFactory.getInstance(DefaultChemObjectBuilder.getInstance());
    [javac]                                                 ^
    [javac]   symbol:   method getInstance(IChemObjectBuilder)
    [javac]   location: class IsotopeFactory
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] 1 error
    [javac] 1 warning

BUILD FAILED
/vol/R/rguha/cdkr/rcdkjar/build.xml:28: Compile failed; see the compiler error output for details.
	at org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1150)
	at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:912)
	at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
	at org.apache.tools.ant.Task.perform(Task.java:348)
	at org.apache.tools.ant.Target.execute(Target.java:390)
	at org.apache.tools.ant.Target.performTasks(Target.java:411)
	at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1399)
	at org.apache.tools.ant.Project.executeTarget(Project.java:1368)
	at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
	at org.apache.tools.ant.Project.executeTargets(Project.java:1251)
	at org.apache.tools.ant.Main.runBuild(Main.java:809)
	at org.apache.tools.ant.Main.startAnt(Main.java:217)
	at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
	at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)