head -1000 shapeit_13112013_22h48m33s_fe3db7fc-f1d8-4c62-b300-06bb806b2ab6.log
Mode    : Converter
Options : --input-haps temp/chr20_snp_sample_reference_intersection --output-haps temp/chr20_ind11464_ATCACG.phased.subset --include-ind temp/11464_ATCACG
Version : v2.r727
Date    : 13/11/2013 22:48:33

MODE -convert : CONVERTING/SUBSETTING SHAPEIT HAPLOTYPES

Parameters :
  * Seed : 1384379313
  * Parallelisation: 1 threads

Reading individuals to include from input file in [temp/11464_ATCACG]
  * 1 individuals found in the include list

Reading individuals in [temp/chr20_snp_sample_reference_intersection.sample] in Impute2 sample format
  * 0 individuals included
  * 1 individuals excluded

Reading haplotypes in [temp/chr20_snp_sample_reference_intersection.haps] in Impute2 format
  * Old HAP/SAMPLE format detected
  * 7490 SNPs included

Writing sample information in [temp/chr20_ind11464_ATCACG.phased.subset.sample] in IMPUTE2 format

Writing haplotypes in [temp/chr20_ind11464_ATCACG.phased.subset.haps] in IMPUTE format

Running time: 0 seconds