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Ytex installation

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Oct 29th, 2014
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  1. nino@nino-pc:/media/nino/Dati/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts$ nohup ../../ant -f build-setup.xml all > setup.out 2>&1 &
  2. [1] 24676
  3. nino@nino-pc:/media/nino/Dati/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts$ tail -f setup.out                                        
  4. nohup: ignoring input
  5. Buildfile: /media/nino/Dati/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/build-setup.xml
  6.  
  7. dbping:
  8.  
  9. dbping:
  10.      [java] DBPing: connection succeeded
  11.  
  12. templateToConfig.init:
  13.  
  14. templateToConfig.extractTemplates:
  15.      [echo] unpacking ytex templates from /media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-res-3.2.0.jar to /media/nino/Dati/apache-ctakes-3.2.0/resources
  16.     [unzip] Expanding: /media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-res-3.2.0.jar into /media/nino/Dati/apache-ctakes-3.2.0/resources
  17.  
  18. templateToConfig.updateConfig:
  19.      [echo] config.source.dir = /media/nino/Dati/apache-ctakes-3.2.0/resources
  20.      [echo] config.generated.dir = /media/nino/Dati/apache-ctakes-3.2.0/resources
  21.      [copy] Copying 6 files to /media/nino/Dati/apache-ctakes-3.2.0/resources
  22.  
  23. templateToConfig:
  24.  
  25. setupDatabase:
  26.  
  27. init:
  28.  
  29. umls.check.mrconso:
  30.      [echo] umls.schema umls
  31.      [echo] umls.catalog
  32.       [sql] Executing commands
  33.       [sql] 1 of 1 SQL statements executed successfully
  34.      [echo] mrconso.out = MRCONSO
  35.      [echo]
  36.    [delete] Deleting: /tmp/mrconso-check.txt
  37.      [echo] mrconso.exists = true
  38.  
  39. umls.all:
  40.      [echo] mrconso.exists = true
  41.  
  42. init:
  43.  
  44. umls.dropAuiFword:
  45.      [echo] drop ytex umls_aui_fword table
  46.  
  47. jdbc.sqlcmd:
  48.      [echo] db.schemaytex
  49.      [echo] umls.schema umls
  50.      [echo] umls.catalog
  51.      [echo] execute ./mysql/./umls/drop_tables.sql
  52.      [copy] Copying 1 file to /tmp
  53.      [echo] executing /tmp/ytex207332858.sql
  54.       [sql] Executing resource: /tmp/ytex207332858.sql
  55.       [sql] 2 of 2 SQL statements executed successfully
  56.    [delete] Deleting: /tmp/ytex207332858.sql
  57.    [delete] Deleting: /tmp/ytex1665210515use.sql
  58.  
  59. umls.setupAuiFword:
  60.      [echo] create ytex umls_aui_fword tables
  61.  
  62. jdbc.sqlcmd:
  63.      [echo] db.schemaytex
  64.      [echo] umls.schema umls
  65.      [echo] umls.catalog
  66.      [echo] execute ./mysql/./umls/create_tables.sql
  67.      [copy] Copying 1 file to /tmp
  68.      [echo] executing /tmp/ytex776249312.sql
  69.       [sql] Executing resource: /tmp/ytex776249312.sql
  70.       [sql] 2 of 2 SQL statements executed successfully
  71.    [delete] Deleting: /tmp/ytex776249312.sql
  72.    [delete] Deleting: /tmp/ytex570451310use.sql
  73.      [echo] setting up umls_aui_fword table. please be patient - this can take a while
  74.      [java] log4j: reset attribute= "false".
  75.      [java] log4j: Threshold ="null".
  76.      [java] log4j: Level value for root is  [INFO].
  77.      [java] log4j: root level set to INFO
  78.      [java] log4j: Class name: [org.apache.log4j.ConsoleAppender]
  79.      [java] log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
  80.      [java] log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
  81.      [java] log4j: Adding appender named [consoleAppender] to category [root].
  82.      [java] 29 Oct 2014 17:27:09  INFO SetupAuiFirstWord - loading lvg.properties from:/media/nino/Dati/apache-ctakes-3.2.0/resources/org/apache/ctakes/lvg/data/config/lvg.properties
  83.      [java] 29 Oct 2014 17:27:10  INFO ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@4148db48: startup date [Wed Oct 29 17:27:10 CET 2014]; root of context hierarchy
  84.      [java] 29 Oct 2014 17:27:10  INFO XmlBeanDefinitionReader - Loading XML bean definitions from URL [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-res-3.2.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
  85.      [java] 29 Oct 2014 17:27:10  INFO XmlBeanDefinitionReader - Loading XML bean definitions from URL [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-web-3.2.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]
  86.      [java] 29 Oct 2014 17:27:10  INFO DefaultListableBeanFactory - Overriding bean definition for bean 'kernelApplicationContext': replacing [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-res-3.2.0.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]] with [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-web-3.2.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]]
  87.      [java] 29 Oct 2014 17:27:10  INFO DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@418e7838: defining beans [kernelApplicationContext]; root of factory hierarchy
  88.      [java] 29 Oct 2014 17:27:10  INFO ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@130d63be: startup date [Wed Oct 29 17:27:10 CET 2014]; root of context hierarchy
  89.      [java] 29 Oct 2014 17:27:10  INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-datasource.xml]
  90.      [java] 29 Oct 2014 17:27:11  INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.hbm.xml]
  91.      [java] 29 Oct 2014 17:27:11  INFO XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
  92.      [java] 29 Oct 2014 17:27:11  INFO PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-default.properties]
  93.      [java] 29 Oct 2014 17:27:11  INFO PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
  94.      [java] 29 Oct 2014 17:27:11  INFO PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-umls.properties]
  95.      [java] 29 Oct 2014 17:27:11  INFO DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@4efc180e: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService]; root of factory hierarchy
  96.      [java] 29 Oct 2014 17:27:12  INFO PropertiesFactoryBean - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
  97.      [java] 29 Oct 2014 17:27:13  INFO Version - HCANN000001: Hibernate Commons Annotations {4.0.2.Final}
  98.      [java] 29 Oct 2014 17:27:13  INFO Version - HHH000412: Hibernate Core {4.2.6.Final}
  99.      [java] 29 Oct 2014 17:27:13  INFO Environment - HHH000206: hibernate.properties not found
  100.      [java] 29 Oct 2014 17:27:13  INFO Environment - HHH000021: Bytecode provider name : javassist
  101.      [java] 29 Oct 2014 17:27:14  INFO Dialect - HHH000400: Using dialect: org.hibernate.dialect.MySQLMyISAMDialect
  102.      [java] 29 Oct 2014 17:27:14  INFO TransactionFactoryInitiator - HHH000399: Using default transaction strategy (direct JDBC transactions)
  103.      [java] 29 Oct 2014 17:27:14  INFO ASTQueryTranslatorFactory - HHH000397: Using ASTQueryTranslatorFactory
  104.      [java] 29 Oct 2014 17:27:14  INFO UpdateTimestampsCache - HHH000250: Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
  105.      [java] 29 Oct 2014 17:27:14  INFO StandardQueryCache - HHH000248: Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
  106.      [java] 29 Oct 2014 17:27:15  INFO HibernateTransactionManager - Using DataSource [org.apache.commons.dbcp.BasicDataSource@2b87581] of Hibernate SessionFactory for HibernateTransactionManager
  107.      [java] 29 Oct 2014 17:27:16  INFO DefaultListableBeanFactory - Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@4efc180e: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,sessionFactory,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService]; root of factory hierarchy
  108.      [java] 29 Oct 2014 17:27:16  INFO DefaultListableBeanFactory - Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@418e7838: defining beans [kernelApplicationContext]; root of factory hierarchy
  109.      [java] Exception in thread "main" java.lang.ExceptionInInitializerError
  110.      [java]     at org.apache.ctakes.ytex.tools.SetupAuiFirstWord.setupAuiFirstWord(SetupAuiFirstWord.java:190)
  111.      [java]     at org.apache.ctakes.ytex.tools.SetupAuiFirstWord.main(SetupAuiFirstWord.java:186)
  112.      [java] Caused by: org.springframework.beans.factory.access.BootstrapException: Unable to initialize group definition. Group resource name [classpath*:org/apache/ctakes/ytex/kernelBeanRefContext.xml], factory key [kernelApplicationContext]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'kernelApplicationContext' defined in URL [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-web-3.2.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
  113.      [java]     at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386)
  114.      [java]     at org.apache.ctakes.ytex.kernel.KernelContextHolder.<clinit>(KernelContextHolder.java:28)
  115.      [java]     ... 2 more
  116.      [java] Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'kernelApplicationContext' defined in URL [jar:file:/media/nino/Dati/apache-ctakes-3.2.0/lib/ctakes-ytex-web-3.2.0-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
  117.      [java]     at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288)
  118.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1035)
  119.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:939)
  120.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
  121.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
  122.      [java]     at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
  123.      [java]     at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
  124.      [java]     at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
  125.      [java]     at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
  126.      [java]     at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
  127.      [java]     at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
  128.      [java]     at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
  129.      [java]     at org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143)
  130.      [java]     at org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381)
  131.      [java]     ... 3 more
  132.      [java] Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
  133.      [java]     at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:162)
  134.      [java]     at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:110)
  135.      [java]     at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280)
  136.      [java]     ... 16 more
  137.      [java] Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'gramMatrixExporter' defined in class path resource [org/apache/ctakes/ytex/beans-kernel.xml]: Initialization of bean failed; nested exception is org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
  138.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:527)
  139.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
  140.      [java]     at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:294)
  141.      [java]     at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:225)
  142.      [java]     at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:291)
  143.      [java]     at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193)
  144.      [java]     at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:609)
  145.      [java]     at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:918)
  146.      [java]     at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:469)
  147.      [java]     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139)
  148.      [java]     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93)
  149.      [java]     at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  150.      [java]     at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
  151.      [java]     at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  152.      [java]     at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
  153.      [java]     at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:147)
  154.      [java]     ... 18 more
  155.      [java] Caused by: org.springframework.beans.FatalBeanException: Failed to obtain BeanInfo for class [org.apache.ctakes.ytex.weka.GramMatrixExporterImpl]; nested exception is java.beans.IntrospectionException: type mismatch between read and write methods
  156.      [java]     at org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:262)
  157.      [java]     at org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:149)
  158.      [java]     at org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:324)
  159.      [java]     at org.springframework.beans.BeanWrapperImpl.getPropertyDescriptors(BeanWrapperImpl.java:331)
  160.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.filterPropertyDescriptorsForDependencyCheck(AbstractAutowireCapableBeanFactory.java:1242)
  161.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1101)
  162.      [java]     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517)
  163.      [java]     ... 33 more
  164.      [java] Caused by: java.beans.IntrospectionException: type mismatch between read and write methods
  165.      [java]     at java.beans.PropertyDescriptor.findPropertyType(PropertyDescriptor.java:659)
  166.      [java]     at java.beans.PropertyDescriptor.setReadMethod(PropertyDescriptor.java:256)
  167.      [java]     at org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:282)
  168.      [java]     at org.springframework.beans.ExtendedBeanInfo.addOrUpdatePropertyDescriptor(ExtendedBeanInfo.java:180)
  169.      [java]     at org.springframework.beans.ExtendedBeanInfo.<init>(ExtendedBeanInfo.java:100)
  170.      [java]     at org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:224)
  171.      [java]     ... 39 more
  172.  
  173. BUILD FAILED
  174. /media/nino/Dati/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/build-setup.xml:55: The following error occurred while executing this line:
  175. /media/nino/Dati/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/data/build.xml:145: The following error occurred while executing this line:
  176. /media/nino/Dati/apache-ctakes-3.2.0/bin/ctakes-ytex/scripts/data/build.xml:263: Java returned: 1
  177.  
  178. Total time: 12 seconds
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