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  1. Jun-03 14:22:07.128 [main] DEBUG nextflow - Console appender: disabled
  2. Jun-03 14:22:07.220 [main] DEBUG nextflow.cli.Launcher - $> /home/msmoot/bin/nextflow node -bg -cluster.join path:/bioscratch/tmp/nextflow
  3. Jun-03 14:22:07.559 [main] DEBUG nextflow.config.ConfigBuilder - Setting config profile: 'null'
  4. Jun-03 14:22:07.627 [main] INFO nextflow.daemon.IgDaemon - Configuring Apache Ignite cluster daemon
  5. Jun-03 14:22:07.640 [main] DEBUG nextflow.daemon.IgGridFactory - Configuration properties for role: 'worker' -- [join:path:/bioscratch/tmp/nextflow]
  6. Jun-03 14:22:07.710 [main] DEBUG nextflow.daemon.IgGridFactory - Ignite config > discovery path: /bioscratch/tmp/nextflow
  7. Jun-03 14:22:07.734 [main] DEBUG nextflow.daemon.IgGridFactory - Apache Ignite config > group name: nextflow
  8. Jun-03 14:22:07.822 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Config URL: n/a
  9. Jun-03 14:22:07.822 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Daemon mode: off
  10. Jun-03 14:22:07.822 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS: Linux 3.10.0-327.10.1.el7.x86_64 amd64
  11. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - OS user: msmoot
  12. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Language runtime: Groovy
  13. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM information: OpenJDK Runtime Environment 1.8.0_91-b14 Oracle Corporation OpenJDK 64-Bit Server VM 25.91-b14
  14. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM total memory: 14.0GB
  15. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Remote Management [restart: off, REST: on, JMX (remote: off)]
  16. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - IGNITE_HOME=null
  17. Jun-03 14:22:07.823 [main] INFO o.a.i.internal.IgniteKernal%nextflow - VM arguments: [-Xverify:none, -Djava.library.path=/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib, -Dfile.encoding=UTF-8, -Dcapsule.app=nextflow_0.19.4, -Djava.awt.headless=true, -Dcapsule.jar=/home/msmoot/.nextflow/framework/0.19.4/nextflow-0.19.4-one.jar]
  18. Jun-03 14:22:07.824 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Configured caches ['ignite-marshaller-sys-cache', 'ignite-sys-cache', 'ignite-atomics-sys-cache', 'allSessions', 'igfs-data', 'igfs-meta']
  19. Jun-03 14:22:07.827 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Local node user attribute [ROLE=worker]
  20. Jun-03 14:22:07.870 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Non-loopback local IPs: 10.8.101.71, 172.17.42.1, fe80:0:0:0:21e:c9ff:fefc:ce99%eno1, fe80:0:0:0:42:e4ff:fec3:5fca%docker0, fe80:0:0:0:4456:14ff:fedb:1e%veth7b74fb0, fe80:0:0:0:987c:bdff:fe7f:c800%vethe17737a, fe80:0:0:0:acc5:2fff:fe9b:6d6a%veth657889b, fe80:0:0:0:b4cf:3bff:fe58:38f7%vethf2eef57, fe80:0:0:0:b8cf:4cff:fe8f:8eae%veth2b6758e, fe80:0:0:0:c4:70ff:feee:711c%vetha249b9f, fe80:0:0:0:f033:4bff:fe57:dda5%veth0968332
  21. Jun-03 14:22:07.870 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Enabled local MACs: 001EC9FCCE99, 0242E4C35FCA, 02C470EE711C, 465614DB001E, 9A7CBD7FC800, AEC52F9B6D6A, B6CF3B5838F7, BACF4C8F8EAE, F2334B57DDA5
  22. Jun-03 14:22:07.880 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - Configured plugins:
  23. Jun-03 14:22:07.881 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor - ^-- None
  24. Jun-03 14:22:07.881 [main] INFO o.a.i.i.p.p.IgnitePluginProcessor -
  25. Jun-03 14:22:07.936 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - IPC shared memory server endpoint started [port=48100, tokDir=/tmp/ignite/ipc/shmem/3a39770d-f6f0-436d-b546-3b9e5e4d4424-5910]
  26. Jun-03 14:22:07.936 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound shared memory communication to TCP port [port=48100, locHost=0.0.0.0/0.0.0.0]
  27. Jun-03 14:22:08.055 [main] INFO o.a.i.s.c.tcp.TcpCommunicationSpi - Successfully bound to TCP port [port=47100, locHost=0.0.0.0/0.0.0.0]
  28. Jun-03 14:22:08.072 [main] WARN o.a.i.s.c.noop.NoopCheckpointSpi - Checkpoints are disabled (to enable configure any GridCheckpointSpi implementation)
  29. Jun-03 14:22:08.092 [main] DEBUG n.daemon.CustomStealingCollisionSpi - Registered SPI MBean: org.apache:clsLdr=3d4eac69,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi
  30. Jun-03 14:22:08.092 [main] DEBUG n.daemon.CustomStealingCollisionSpi - SPI started ok [startMs=0, spiMBean=org.apache:clsLdr=3d4eac69,grid=nextflow,group=SPIs,name=CustomStealingCollisionSpi]
  31. Jun-03 14:22:08.094 [main] WARN o.a.i.s.s.noop.NoopSwapSpaceSpi - Swap space is disabled. To enable use FileSwapSpaceSpi.
  32. Jun-03 14:22:08.095 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Security status [authentication=off, tls/ssl=off]
  33. Jun-03 14:22:08.228 [main] INFO o.a.i.i.p.r.p.t.GridTcpRestProtocol - Command protocol successfully started [name=TCP binary, host=0.0.0.0/0.0.0.0, port=11211]
  34. Jun-03 14:22:08.259 [main] INFO o.a.i.i.u.i.s.IpcSharedMemoryServerEndpoint - IPC shared memory server endpoint started [port=10500, tokDir=/tmp/ignite/ipc/shmem/3a39770d-f6f0-436d-b546-3b9e5e4d4424-5910]
  35. Jun-03 14:22:08.261 [main] INFO o.a.i.i.u.i.l.IpcServerTcpEndpoint - IPC server loopback endpoint started [port=11400]
  36. Jun-03 14:22:08.285 [main] INFO o.a.i.s.d.tcp.TcpDiscoverySpi - Successfully bound to TCP port [port=47500, localHost=0.0.0.0/0.0.0.0]
  37. Jun-03 14:22:08.337 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FINISHED
  38. Jun-03 14:22:08.338 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: TASK_FAILED
  39. Jun-03 14:22:08.338 [main] WARN o.a.i.i.m.e.GridEventStorageManager - Added listener for disabled event type: JOB_MAPPED
  40. Jun-03 14:22:08.450 [main] WARN o.a.i.i.p.c.GridCacheEvictionManager - <igfs-data> Evictions are not synchronized with other nodes in topology which provides 2x-3x better performance but may cause data inconsistency if cache store is not configured (consider changing 'evictSynchronized' configuration property).
  41. Jun-03 14:22:08.470 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-data, mode=PARTITIONED]
  42. Jun-03 14:22:08.474 [main] WARN o.a.i.i.p.cache.GridCacheProcessor - Eviction policy not enabled with ONHEAP_TIERED mode for cache (entries will not be moved to off-heap store): allSessions
  43. Jun-03 14:22:08.538 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=allSessions, mode=PARTITIONED]
  44. Jun-03 14:22:08.543 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-sys-cache, mode=REPLICATED]
  45. Jun-03 14:22:08.547 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-atomics-sys-cache, mode=PARTITIONED]
  46. Jun-03 14:22:08.553 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=igfs-meta, mode=REPLICATED]
  47. Jun-03 14:22:08.554 [main] INFO o.a.i.i.p.cache.GridCacheProcessor - Started cache [name=ignite-marshaller-sys-cache, mode=REPLICATED]
  48. Jun-03 14:22:08.676 [exchange-worker-#53%nextflow%] INFO o.a.i.i.p.c.GridCachePartitionExchangeManager - Skipping rebalancing (nothing scheduled) [top=AffinityTopologyVersion [topVer=1, minorTopVer=0], evt=NODE_JOINED, node=3a39770d-f6f0-436d-b546-3b9e5e4d4424]
  49. Jun-03 14:22:08.706 [main] INFO o.a.i.internal.IgniteKernal%nextflow - Performance suggestions for grid 'nextflow' (fix if possible)
  50. Jun-03 14:22:08.707 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To disable, set -DIGNITE_PERFORMANCE_SUGGESTIONS_DISABLED=true
  51. Jun-03 14:22:08.707 [main] INFO o.a.i.internal.IgniteKernal%nextflow - ^-- Disable collision resolution (remove 'collisionSpi' from configuration)
  52. Jun-03 14:22:08.707 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
  53. Jun-03 14:22:08.707 [main] INFO o.a.i.internal.IgniteKernal%nextflow - To start Console Management & Monitoring run ignitevisorcmd.{sh|bat}
  54. Jun-03 14:22:08.707 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
  55. Jun-03 14:22:08.707 [main] INFO o.a.i.internal.IgniteKernal%nextflow -
  56.  
  57. >>> +----------------------------------------------------------------------------+
  58. >>> Ignite ver. 1.5.0-final#20151229-sha1:f1f8cda2f3f62231f42a59951bf34c39577c1bec
  59. >>> +----------------------------------------------------------------------------+
  60. >>> OS name: Linux 3.10.0-327.10.1.el7.x86_64 amd64
  61. >>> CPU(s): 8
  62. >>> Heap: 14.0GB
  63. >>> VM name: 5910@asm01.c01.l.synthgeno.global
  64. >>> Grid name: nextflow
  65. >>> Local node [ID=3A39770D-F6F0-436D-B546-3B9E5E4D4424, order=1, clientMode=false]
  66. >>> Local node addresses: [asm01.c01.l.synthgeno.global/0:0:0:0:0:0:0:1%lo, 172.17.42.1/10.8.101.71, /127.0.0.1, /172.17.42.1]
  67. >>> Local ports: TCP:10500 TCP:11211 TCP:11400 TCP:47100 TCP:47500 TCP:48100
  68.  
  69. Jun-03 14:22:08.708 [main] INFO o.a.i.i.m.d.GridDiscoveryManager - Topology snapshot [ver=1, servers=1, clients=0, CPUs=8, heap=14.0GB]
  70. Jun-03 14:22:08.709 [main] DEBUG nextflow.daemon.IgDaemon - Configuring Apache Ignite file system
  71. Jun-03 14:22:08.717 [disco-event-worker-#50%nextflow%] DEBUG n.daemon.CustomStealingCollisionSpi - Computing resources for node: `asm01.c01.l.synthgeno.global` [worker] > cpus: 8; mem: 61.8 GB; free disk: 615.5 GB (/tmp)
  72. Jun-03 14:22:08.727 [main] DEBUG nextflow.file.FileHelper - Creating a file system instance for provider: IgFileSystemProvider
  73. Jun-03 14:23:08.708 [grid-timeout-worker-#33%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
  74. Metrics for local node (to disable set 'metricsLogFrequency' to 0)
  75. ^-- Node [id=3a39770d, name=nextflow]
  76. ^-- H/N/C [hosts=1, nodes=1, CPUs=8]
  77. ^-- CPU [cur=0.1%, avg=0.11%, GC=0%]
  78. ^-- Heap [used=181MB, free=98.71%, comm=720MB]
  79. ^-- Public thread pool [active=0, idle=16, qSize=0]
  80. ^-- System thread pool [active=0, idle=16, qSize=0]
  81. ^-- Outbound messages queue [size=0]
  82. Jun-03 14:24:08.711 [grid-timeout-worker-#33%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
  83. Metrics for local node (to disable set 'metricsLogFrequency' to 0)
  84. ^-- Node [id=3a39770d, name=nextflow]
  85. ^-- H/N/C [hosts=1, nodes=1, CPUs=8]
  86. ^-- CPU [cur=0.1%, avg=0.1%, GC=0%]
  87. ^-- Heap [used=186MB, free=98.67%, comm=720MB]
  88. ^-- Public thread pool [active=0, idle=16, qSize=0]
  89. ^-- System thread pool [active=0, idle=16, qSize=0]
  90. ^-- Outbound messages queue [size=0]
  91. Jun-03 14:25:08.715 [grid-timeout-worker-#33%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
  92. Metrics for local node (to disable set 'metricsLogFrequency' to 0)
  93. ^-- Node [id=3a39770d, name=nextflow]
  94. ^-- H/N/C [hosts=1, nodes=1, CPUs=8]
  95. ^-- CPU [cur=0%, avg=0.09%, GC=0%]
  96. ^-- Heap [used=191MB, free=98.64%, comm=720MB]
  97. ^-- Public thread pool [active=0, idle=16, qSize=0]
  98. ^-- System thread pool [active=0, idle=16, qSize=0]
  99. ^-- Outbound messages queue [size=0]
  100. Jun-03 14:26:08.714 [grid-timeout-worker-#33%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
  101. Metrics for local node (to disable set 'metricsLogFrequency' to 0)
  102. ^-- Node [id=3a39770d, name=nextflow]
  103. ^-- H/N/C [hosts=1, nodes=1, CPUs=8]
  104. ^-- CPU [cur=0.13%, avg=0.08%, GC=0%]
  105. ^-- Heap [used=196MB, free=98.61%, comm=720MB]
  106. ^-- Public thread pool [active=0, idle=16, qSize=0]
  107. ^-- System thread pool [active=0, idle=16, qSize=0]
  108. ^-- Outbound messages queue [size=0]
  109. Jun-03 14:27:08.721 [grid-timeout-worker-#33%nextflow%] INFO o.a.i.internal.IgniteKernal%nextflow -
  110. Metrics for local node (to disable set 'metricsLogFrequency' to 0)
  111. ^-- Node [id=3a39770d, name=nextflow]
  112. ^-- H/N/C [hosts=1, nodes=1, CPUs=8]
  113. ^-- CPU [cur=0.03%, avg=0.07%, GC=0%]
  114. ^-- Heap [used=201MB, free=98.57%, comm=720MB]
  115. ^-- Public thread pool [active=0, idle=16, qSize=0]
  116. ^-- System thread pool [active=0, idle=16, qSize=0]
  117. ^-- Outbound messages queue [size=0]
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