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trtinity-naghizadeh

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May 16th, 2016
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  1. mehdi@home-srv:/media/mehdi/New Volume1/trinity/trinityrnaseq-2.2.0$ make
  2. Using gnu compiler for Inchworm and Chrysalis
  3. cd Inchworm && (test -e configure || autoreconf) \
  4. && sh ./configure --prefix=`pwd` && make install
  5. configure: WARNING: you should use --build, --host, --target
  6. configure: WARNING: invalid host type: Volume1/trinity/trinityrnaseq-2.2.0/Inchworm
  7. checking for a BSD-compatible install... /usr/bin/install -c
  8. checking whether build environment is sane... yes
  9. checking for a thread-safe mkdir -p... /bin/mkdir -p
  10. checking for gawk... gawk
  11. checking whether make sets $(MAKE)... yes
  12. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-g++... no
  13. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-c++... no
  14. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-gpp... no
  15. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-aCC... no
  16. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-CC... no
  17. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-cxx... no
  18. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-cc++... no
  19. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-cl.exe... no
  20. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-FCC... no
  21. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-KCC... no
  22. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-RCC... no
  23. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-xlC_r... no
  24. checking for Volume1/trinity/trinityrnaseq-2.2.0/Inchworm-xlC... no
  25. checking for g++... g++
  26. checking for C++ compiler default output file name... a.out
  27. checking whether the C++ compiler works... configure: error: in `/media/mehdi/New Volume1/trinity/trinityrnaseq-2.2.0/Inchworm':
  28. configure: error: cannot run C++ compiled programs.
  29. If you meant to cross compile, use `--host'.
  30. See `config.log' for more details.
  31. make: *** [inchworm_target] Error 1
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