cmake shogun

user@ubuntuvm:~$ cd shogun
user@ubuntuvm:~/shogun$ mkdir build
user@ubuntuvm:~/shogun$ cd build
user@ubuntuvm:~/shogun/build$
user@ubuntuvm:~/shogun/build$ cmake -DPythonModular=ON -DCMAKE_INSTALL_PREFIX="$HOME/shogun-install" ..
-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found CCache: /usr/bin/ccache
-- Found SWIG: /usr/bin/swig2.0 (found suitable version "2.0.11", minimum required is "2.0.4")
-- Performing Test _HAS_CXX11_FLAG
-- Performing Test _HAS_CXX11_FLAG - Success
-- Checking C++11 support for "__func__"
-- Checking C++11 support for "__func__": works
-- Checking C++11 support for "atomic"
-- Checking C++11 support for "atomic": works
-- Checking C++11 support for "auto"
-- Checking C++11 support for "auto": works
-- Checking C++11 support for "auto_ret_type"
-- Checking C++11 support for "auto_ret_type": works
-- Checking C++11 support for "class_override_final"
-- Checking C++11 support for "class_override_final": not supported
-- Checking C++11 support for "constexpr"
-- Checking C++11 support for "constexpr": works
-- Checking C++11 support for "cstdint"
-- Checking C++11 support for "cstdint": works
-- Checking C++11 support for "decltype"
-- Checking C++11 support for "decltype": works
-- Checking C++11 support for "initializer_list"
-- Checking C++11 support for "initializer_list": works
-- Checking C++11 support for "lambda"
-- Checking C++11 support for "lambda": works
-- Checking C++11 support for "long_long"
-- Checking C++11 support for "long_long": works
-- Checking C++11 support for "nullptr"
-- Checking C++11 support for "nullptr": works
-- Checking C++11 support for "regex"
-- Checking C++11 support for "regex": not supported
-- Checking C++11 support for "rvalue-references"
-- Checking C++11 support for "rvalue-references": works
-- Checking C++11 support for "sizeof_member"
-- Checking C++11 support for "sizeof_member": works
-- Checking C++11 support for "static_assert"
-- Checking C++11 support for "static_assert": works
-- Checking C++11 support for "variadic_templates"
-- Checking C++11 support for "variadic_templates": works
-- Looking for C++ include unordered_map
-- Looking for C++ include unordered_map - found
-- Using system's malloc
-- Looking for isfinite
-- Looking for isfinite - not found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isnan
-- Looking for isnan - found
-- Looking for signgam
-- Looking for signgam - found
-- Looking for log2
-- Looking for log2 - found
-- Looking for powl
-- Looking for powl - found
-- Looking for lgammal
-- Looking for lgammal - found
-- Looking for sqrtl
-- Looking for sqrtl - found
-- Looking for finite
-- Looking for finite - found
-- Looking for isfinite
-- Looking for isfinite - not found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isnan
-- Looking for isnan - found
-- Performing Test HAVE_STD_ISINF
-- Performing Test HAVE_STD_ISINF - Success
-- Performing Test HAVE_STD_ISFINITE
-- Performing Test HAVE_STD_ISFINITE - Success
-- Performing Test HAVE_STD_ISNAN
-- Performing Test HAVE_STD_ISNAN - Success
-- Looking for xmmintrin.h
-- Looking for xmmintrin.h - found
-- Looking for emmintrin.h
-- Looking for emmintrin.h - found
-- Looking for arc4random
-- Looking for arc4random - not found
-- Found GDB: /usr/bin/gdb
-- Could NOT find MOSEK (missing:  MOSEK_DIR MOSEK_INCLUDE_DIR MOSEK_LIBRARY)
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26")
-- Looking for dgemm_
-- Looking for dgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Looking for clapack_dpotrf in /usr/lib/atlas-base/liblapack_atlas.so.3
-- Looking for clapack_dpotrf in /usr/lib/atlas-base/liblapack_atlas.so.3 - found
-- Found ATLAS: /usr/lib/atlas-base/liblapack_atlas.so.3;/usr/lib/atlas-base/libcblas.so.3;/usr/lib/atlas-base/libf77blas.so.3;/usr/lib/atlas-base/libatlas.so.3;/usr/lib/liblapack.so.3
-- Found GLPK: /usr/lib/i386-linux-gnu/libglpk.so
-- Could NOT find CPLEX (missing:  CPLEX_LIBRARY CPLEX_INCLUDE_DIR)
-- Found Eigen3: /usr/include/eigen3 (found suitable version "3.2.0", minimum required is "3.1.2")
-- Could NOT find OPENCL (missing:  OPENCL_LIBRARY OPENCL_INCLUDE_DIR)
-- Could NOT find ViennaCL (missing:  VIENNACL_INCLUDE_DIR OPENCL_INCLUDE_DIRS OPENCL_LIBRARIES) (Required is at least version "1.5.0")
-- checking for one of the modules 'libColPack>=1.0.9;ColPack>=1.0.9'
-- Found NLOPT: /usr/local/lib/libnlopt.a
-- Found LPSOLVE: /usr/lib/liblpsolve55.a
-- Found ColPack: /usr/lib/i386-linux-gnu/libColPack.so
-- Could NOT find ARPREC (missing:  ARPREC_LIBRARIES ARPREC_INCLUDE_DIR)
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE)
-- Found PythonInterp: /usr/bin/python (found version "2.7.6")
-- checking for one of the modules 'libjson>=0.11;json>=0.11;json-c>=0.11'
-- Found LibXml2: /usr/lib/i386-linux-gnu/libxml2.so (found version "2.9.1")
-- Could NOT find HDF5 (missing:  HDF5_LIBRARIES HDF5_INCLUDE_DIRS)
-- Could NOT find CURL (missing:  CURL_LIBRARY CURL_INCLUDE_DIR)
-- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.8")
-- Found BZip2: /usr/lib/i386-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit in /usr/lib/i386-linux-gnu/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib/i386-linux-gnu/libbz2.so - found
-- Could NOT find LibLZMA (missing:  LIBLZMA_INCLUDE_DIR LIBLZMA_LIBRARY LIBLZMA_HAS_AUTO_DECODER LIBLZMA_HAS_EASY_ENCODER LIBLZMA_HAS_LZMA_PRESET)
-- Could NOT find SNAPPY (missing:  SNAPPY_LIBRARIES SNAPPY_INCLUDE_DIR)
-- Lzo includes and libraries NOT found.
-- Spinlock support found
-- Could NOT find PROTOBUF (missing:  PROTOBUF_LIBRARY PROTOBUF_INCLUDE_DIR)
-- Supported backend(s) for linear algebra libraries found
-- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython2.7.so (found version "2.7.6")
-- Found NumPy: version "1.8.2" /usr/lib/python2.7/dist-packages/numpy/core/include
-- ===================================================================================================================
-- Summary of Configuration Variables
--
-- The following OPTIONAL packages have been found:

 * CCache
 * GDB
 * OpenMP
 * BLAS
 * LAPACK
 * Atlas
 * GLPK
 * Eigen3 (required version >= 3.1.2)
 * NLopt
 * LpSolve
 * ColPack
 * LibXml2
 * ZLIB
 * BZip2
 * Spinlock
 * Threads

-- The following REQUIRED packages have been found:

 * SWIG (required version >= 2.0.4)
 * PythonLibs
 * PythonInterp
 * NumPy

-- The following OPTIONAL packages have not been found:

 * Mosek
 * CPLEX
 * ARPACK
 * ViennaCL (required version >= 1.5.0)
 * ARPREC
 * Doxygen
 * HDF5
 * CURL
 * LibLZMA
 * SNAPPY
 * LZO
 * Protobuf

-- The following REQUIRED packages have not been found:

 * OpenCL

-- ===================================================================================================================
-- Enabled Integration
--   OpenCV Integration is OFF   - enable with -DOpenCV=ON
-- ===================================================================================================================
-- Enabled Interfaces
--   libshogun is ON
--   python modular is ON
--   octave modular is OFF   - enable with -DOctaveModular=ON
--   java modular is OFF     - enable with -DJavaModular=ON
--   perl modular is OFF     - enable with -DPerlModular=ON
--   ruby modular is OFF     - enable with -DRubyModular=ON
--   csharp modular is OFF   - enable with -DCSharpModular=ON
--   R modular is OFF        - enable with -DRModular=ON
--   lua modular is OFF      - enable with -DLuaModular=ON
--
-- Enabled legacy interfaces
--   cmdline static is OFF   - enable with -DCmdLineStatic=ON
--   python static is OFF    - enable with -DPythonStatic=ON
--   octave static is OFF    - enable with -DOctaveStatic=ON
--   matlab static is OFF    - enable with -DMatlabStatic=ON
--   R static is OFF         - enable with -DRStatic=ON
-- ===================================================================================================================
-- To compile shogun type
--   make
--
-- To install shogun to /home/user/shogun-install type
--   make install
--
-- or to install to a custom directory
--   make install DESTDIR=/my/special/path
--   (or rerun cmake with -DCMAKE_INSTALL_PREFIX=/my/special/path) to just change the prefix
-- ===================================================================================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /home/user/shogun/build
user@ubuntuvm:~/shogun/build$