Not a member of Pastebin yet?
Sign Up,
it unlocks many cool features!
- LOCUS ctg7180000000028 4191 bp DNA linear UNK
- DEFINITION Contig ctg7180000000028 from Atopobium vaginae B758
- ACCESSION unknown
- FEATURES Location/Qualifiers
- source 1..4191
- /mol_type="genomic DNA"
- /db_xref="taxon: 82135"
- /genome_md5=""
- /project="earl_82135"
- /genome_id="82135.3"
- /organism="Atopobium vaginae B758"
- CDS complement(10..1740)
- /translation="MKLAQLKMVCRGENAGFACIQLCEKPALLKVHAHTKDTNMPCPA
- RLVCLDELYGVRSSIDDAATGSWWVVIIPLLSVDCVVELSITRASQGLSSDTWSFVFG
- PHTSRYMSRLLTLRHPQAAALLRRIVHSAAYVHHQLNLIGIWNAAAQTSDSPDVPMRI
- WRFEARFTCDNSPAFEYFPISCCVLSSTGEPIRARVITLEEQTAAVPDDSAECVRRAV
- FSIALPHACTHAVVCARLNFKHVASLSCDGGDRARALQKASASTYEAFYTIFPAAAAA
- RIAEAERFSRDCAHDPHYERWFDEHAATSEQCAMQTRRYEEACACMEHREESTTHADQ
- PAQPVQLAQPAQPAQTSFDDALAHMGISVVLPVFSASTTLLARSINAMIHQSFPAWQL
- IVLDCTHMRTPNQQTDIARWLHSYTKTDARIMYVRMNVEQSQKNQAVAGESLSDSGAH
- AAGVAQPTDDIIDASRDHYAHHSSYLAYACSFIQNPYVYIMSEGAAPTPDALWHIAQT
- VAQHIAKGTPCDVVHVDEDELTPQGCTKPHVSYAASMIGLEGTNYLGHSLVLRTALLD
- ELRAPCDVAT"
- /product="hypothetical protein"
- CDS complement(1759..1875)
- /translation="MPRMYNAHADKVLQKRSKRRCTRLAPAEPHVVRVLLNL"
- /product="hypothetical protein"
- CDS complement(1844..2461)
- /db_xref="GO:0008830"
- /translation="MTQRTETSQAIQSGNFIFTPTSIRDVIIVDTKQYGDARGYFMET
- YKASDFAAGGISTTFVQDNQSSSTKGVLRGLHFQIEHPQAKLVRVVRGCVFDVAVDLR
- AGSETFGAWEGVELSAENHRQFYIPRGFAHGFFVLSDEAEFCYKCDDVYHPGDEGGLM
- WNDPDLAISWPAPCGCDSFSPSQVILSDKDTHHESFAAYVQRTRG"
- /product="dTDP-4-dehydrorhamnose 3,5-epimerase (EC
- 5.1.3.13)"
- /EC_number="5.1.3.13"
- CDS complement(2586..2741)
- /translation="MRTLSTYTSIFEQICISLGRALVLSCSMAARKIALADAPAGARC
- VALCAFP"
- /product="hypothetical protein"
- CDS complement(2798..3193)
- /translation="MSAILAIVPAYNEQQCIQQTIDELRRVCPGVDYLIVNDGSRDET
- AAICRRRHFNYINVPINCGLASGVQAGMKYAERNGYSAVVQFDADGQHKPEYIVPMYE
- HMQKTGADVVIGSRFVDDALLLVVCRHNC"
- /product="Glycosyltransferase involved in cell wall
- biogenesis (EC 2.4.-.-)"
- CDS 3238..3393
- /translation="MRTLSTYTSIFEQICISLGRALVLSCSMAARKIALADAPAGARC
- VALCAFP"
- /product="hypothetical protein"
- CDS 3518..4135
- /db_xref="GO:0008830"
- /translation="MTQRTETSQAIQSGNFIFTPTSIRDVIIVDTKQYGDARGYFMET
- YKASDFAAGGISTTFVQDNQSSSTKGVLRGLHFQIEHPQAKLVRVVRGCVFDVAVDLR
- AGSETFGAWEGVELSAENHRQFYIPRGFAHGFFVLSDEAEFCYKCDDVYHPGDEGGLM
- WNDPDLAISWPAPCGCDSFSPSQVILSDKDTHHESFAAYVQRTRG"
- /product="dTDP-4-dehydrorhamnose 3,5-epimerase (EC
- 5.1.3.13)"
- /EC_number="5.1.3.13"
- BASE COUNT 1077 a 1055 c 1036 g 1023 t
- ORIGIN
- 1 aatcgcgctt catgttgcaa catcgcatgg cgcgcgaagt tcatccaaaa gcgcagttct
- 61 caacacgagt gaatgtccaa gatagttagt gccttcaagc ccaatcatgc ttgctgcata
- 121 actcacgtga ggctttgtgc agccttgggg cgtgagctca tcttcatcaa catgtacaac
- 181 atcgcagggt gtaccttttg ctatgtgctg tgctaccgtt tgtgcaatat gccacagggc
- 241 atcgggcgtg ggagctgccc cctcactcat aatgtaaacg tacgggtttt gtataaacga
- 301 acatgcatac gcaagatacg agctatggtg cgcataatgg tcgcgagatg catcgataat
- 361 atcatctgta ggctgtgcta cgccagcagc atgcgcgcct gaatctgaca atgattcccc
- 421 agctacagct tggtttttct gtgattgttc cacgttcata cgcacataca taatgcgcgc
- 481 atcggtctta gtatagctat gaagccagcg tgcaatatct gtttgttggt tgggagtgcg
- 541 catgtgtgta caatcgagca cgataagctg ccatgccgga aaactctgat gtatcatcgc
- 601 gttaatactg cgcgcaagca gtgtagtcga tgctgaaaaa acgggcagta ccaccgaaat
- 661 acccatgtgt gcaagcgcat catcaaacga tgtctgtgca ggttgtgcag gttgcgcaag
- 721 ctggacaggt tgtgcaggct ggtcagcatg cgtggtgctc tcttcgcggt gttccataca
- 781 cgcgcacgcc tcttcgtacc tgcgtgtttg catagcgcac tgctcagacg tagctgcatg
- 841 ctcatcaaac cagcgctcat agtgaggatc gtgagcgcaa tcgcgactaa aacgctcggc
- 901 ctcagcaatg cgcgcggccg cagcagcagg aaaaatggta taaaaggctt cgtaggtaga
- 961 tgcagacgct ttttgcaacg cgcgggctcg atctccaccg tcgcagctca acgatgccac
- 1021 atgcttaaag ttgaggcgcg cgcacacaac agcatgcgtg cacgcgtgcg gcaatgcaat
- 1081 cgaaaacacc gcacgacgaa cgcattcagc gctgtcatcc ggaacagctg ccgtttgctc
- 1141 ttctagcgta attacacgtg cacgtatggg ctcacctgta ctgctcagca cgcagcagct
- 1201 tataggaaaa tattcaaacg caggcgaatt gtcgcaggta aaccgcgctt caaatcgcca
- 1261 tatacgcatc ggcacatcgg gagagtcgct tgtttgcgca gcggcattcc aaataccaat
- 1321 aagattaagc tgatggtgca catatgcagc actgtgaacg atgcggcgta gcaacgcggc
- 1381 cgcttgagga tggcggagcg taagtaaacg cgacatgtag cgcgacgtat gaggaccaaa
- 1441 aacaaacgac cacgtatcag aactcagacc ctgcgacgca cgtgttatgc tgagctcaac
- 1501 cacacaatca acgctcaaca gcggaataat aacaacccac cacgaccccg ttgcagcatc
- 1561 atcaatgctc gaacgaacgc catagagctc gtctaaacac acaagacgcg caggacacgg
- 1621 catattcgta tctttggtat gtgcatgcac tttaagcaat gcgggctttt cgcacagctg
- 1681 aatgcaggca aaccctgcgt tttcgccgcg gcaaaccatt tttaattgcg cgagtttcat
- 1741 gcagtcccct tactgttgtt aaagattaag cagcacgcgc acaacatgcg gctctgcggg
- 1801 cgcaagtcgt gtgcagcgcc tttttgagcg cttttggagc accttatccg cgtgtgcgtt
- 1861 gtacatacgc ggcaaacgat tcatgatggg tatctttatc agacaaaata acctgcgagg
- 1921 gcgaaaagct atcgcagcca caaggcgcag gccagctaat agcaagatcg ggatcgttcc
- 1981 acataaggcc accttcatcg cctggatgat acacgtcgtc gcacttatag caaaattctg
- 2041 cctcatctga gagtacaaaa aatccgtgag caaagccgcg cggtatatag aattgtcgat
- 2101 gattttcggc cgataattca acgccttccc atgcaccaaa ggtctctgaa cctgcgcgca
- 2161 agtctaccgc aacatcaaac acacagccac gcacaacacg aacgagtttt gcttgagggt
- 2221 gttcaatctg aaaatgcagg ccacgaagca cgccttttgt ggagctcgat tggttatcct
- 2281 gtacaaacgt agtagaaata ccacccgcag caaaatcgga tgctttgtac gtttccataa
- 2341 agtacccgcg cgcgtcacca tactgtttgg tatcaacaat aataacgtcg cgaatagatg
- 2401 taggtgtaaa aataaaattg cccgattgaa tagcctgaga tgtttctgta cgctgtgtca
- 2461 taccttaact cctttagcgc gcgctccttt agcgcacaaa tatgcgctaa cgaattgtgc
- 2521 aatacctgca acggtttatt tcattgtagc gcacgaatat acgcctacga tatgttcata
- 2581 caatgctacg gaaatgcaca cagcgcgaca caccgtgcgc ccgcaggcgc atctgccagt
- 2641 gcaatcttcc ttgccgccat gctacacgaa agaacaagtg cgcgccccaa tgatatgcag
- 2701 atttgctcaa aaatagaggt atacgtgctc aaagtacgca atggtgcggt atacttgcac
- 2761 agatatacca actttatgga gaactatgtc tgcaatatta gcaattgtgc ctgcatacaa
- 2821 cgagcagcag tgcatcgtca acaaaacgcg aaccaataac aacgtcggca cctgtttttt
- 2881 gcatgtgctc gtacatgggc acgatgtact cgggtttgtg ctgaccatcg gcatcaaatt
- 2941 gcacaactgc agaatagcca ttgcgctctg catatttcat gccagcttga acgcccgaag
- 3001 caaggccgca gttaatgggc acatttatgt agttaaaatg gcgcctacgg catatagctg
- 3061 cggtttcgtc gcgcgagccg tcgtttacaa taaggtagtc tacgccgggg cacacgcggc
- 3121 gcagctcatc gattgtttgt tgtatgcact gctgctcgtt gtatgcaggc acaattgcta
- 3181 atattgcaga catagttctc cataaagttg gtatatctgt gcaagtatac cgcaccattg
- 3241 cgtactttga gcacgtatac ctctattttt gagcaaatct gcatatcatt ggggcgcgca
- 3301 cttgttcttt cgtgtagcat ggcggcaagg aagattgcac tggcagatgc gcctgcgggc
- 3361 gcacggtgtg tcgcgctgtg tgcatttccg tagcattgta tgaacatatc gtaggcgtat
- 3421 attcgtgcgc tacaatgaaa taaaccgttg caggtattgc acaattcgtt agcgcatatt
- 3481 tgtgcgctaa aggagcgcgc gctaaaggag ttaaggtatg acacagcgta cagaaacatc
- 3541 tcaggctatt caatcgggca attttatttt tacacctaca tctattcgcg acgttattat
- 3601 tgttgatacc aaacagtatg gtgacgcgcg cgggtacttt atggaaacgt acaaagcatc
- 3661 cgattttgct gcgggtggta tttctactac gtttgtacag gataaccaat cgagctccac
- 3721 aaaaggcgtg cttcgtggcc tgcattttca gattgaacac cctcaagcaa aactcgttcg
- 3781 tgttgtgcgt ggctgtgtgt ttgatgttgc ggtagacttg cgcgcaggtt cagagacctt
- 3841 tggtgcatgg gaaggcgttg aattatcggc cgaaaatcat cgacaattct atataccgcg
- 3901 cggctttgct cacggatttt ttgtactctc agatgaggca gaattttgct ataagtgcga
- 3961 cgacgtgtat catccaggcg atgaaggtgg ccttatgtgg aacgatcccg atcttgctat
- 4021 tagctggcct gcgccttgtg gctgcgatag cttttcgccc tcgcaggtta ttttgtctga
- 4081 taaagatacc catcatgaat cgtttgccgc gtatgtacaa cgcacacgcg gataaggtgc
- 4141 tccaaaagcg ctcaaaaagg cgctgcacac gacttgcgcc cggcagagcc g
- //
Add Comment
Please, Sign In to add comment