Guest User

example rast genbank

a guest
Sep 17th, 2012
55
0
Never
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 8.74 KB | None | 0 0
  1. LOCUS ctg7180000000028 4191 bp DNA linear UNK
  2. DEFINITION Contig ctg7180000000028 from Atopobium vaginae B758
  3. ACCESSION unknown
  4. FEATURES Location/Qualifiers
  5. source 1..4191
  6. /mol_type="genomic DNA"
  7. /db_xref="taxon: 82135"
  8. /genome_md5=""
  9. /project="earl_82135"
  10. /genome_id="82135.3"
  11. /organism="Atopobium vaginae B758"
  12. CDS complement(10..1740)
  13. /translation="MKLAQLKMVCRGENAGFACIQLCEKPALLKVHAHTKDTNMPCPA
  14. RLVCLDELYGVRSSIDDAATGSWWVVIIPLLSVDCVVELSITRASQGLSSDTWSFVFG
  15. PHTSRYMSRLLTLRHPQAAALLRRIVHSAAYVHHQLNLIGIWNAAAQTSDSPDVPMRI
  16. WRFEARFTCDNSPAFEYFPISCCVLSSTGEPIRARVITLEEQTAAVPDDSAECVRRAV
  17. FSIALPHACTHAVVCARLNFKHVASLSCDGGDRARALQKASASTYEAFYTIFPAAAAA
  18. RIAEAERFSRDCAHDPHYERWFDEHAATSEQCAMQTRRYEEACACMEHREESTTHADQ
  19. PAQPVQLAQPAQPAQTSFDDALAHMGISVVLPVFSASTTLLARSINAMIHQSFPAWQL
  20. IVLDCTHMRTPNQQTDIARWLHSYTKTDARIMYVRMNVEQSQKNQAVAGESLSDSGAH
  21. AAGVAQPTDDIIDASRDHYAHHSSYLAYACSFIQNPYVYIMSEGAAPTPDALWHIAQT
  22. VAQHIAKGTPCDVVHVDEDELTPQGCTKPHVSYAASMIGLEGTNYLGHSLVLRTALLD
  23. ELRAPCDVAT"
  24. /product="hypothetical protein"
  25. CDS complement(1759..1875)
  26. /translation="MPRMYNAHADKVLQKRSKRRCTRLAPAEPHVVRVLLNL"
  27. /product="hypothetical protein"
  28. CDS complement(1844..2461)
  29. /db_xref="GO:0008830"
  30. /translation="MTQRTETSQAIQSGNFIFTPTSIRDVIIVDTKQYGDARGYFMET
  31. YKASDFAAGGISTTFVQDNQSSSTKGVLRGLHFQIEHPQAKLVRVVRGCVFDVAVDLR
  32. AGSETFGAWEGVELSAENHRQFYIPRGFAHGFFVLSDEAEFCYKCDDVYHPGDEGGLM
  33. WNDPDLAISWPAPCGCDSFSPSQVILSDKDTHHESFAAYVQRTRG"
  34. /product="dTDP-4-dehydrorhamnose 3,5-epimerase (EC
  35. 5.1.3.13)"
  36. /EC_number="5.1.3.13"
  37. CDS complement(2586..2741)
  38. /translation="MRTLSTYTSIFEQICISLGRALVLSCSMAARKIALADAPAGARC
  39. VALCAFP"
  40. /product="hypothetical protein"
  41. CDS complement(2798..3193)
  42. /translation="MSAILAIVPAYNEQQCIQQTIDELRRVCPGVDYLIVNDGSRDET
  43. AAICRRRHFNYINVPINCGLASGVQAGMKYAERNGYSAVVQFDADGQHKPEYIVPMYE
  44. HMQKTGADVVIGSRFVDDALLLVVCRHNC"
  45. /product="Glycosyltransferase involved in cell wall
  46. biogenesis (EC 2.4.-.-)"
  47. CDS 3238..3393
  48. /translation="MRTLSTYTSIFEQICISLGRALVLSCSMAARKIALADAPAGARC
  49. VALCAFP"
  50. /product="hypothetical protein"
  51. CDS 3518..4135
  52. /db_xref="GO:0008830"
  53. /translation="MTQRTETSQAIQSGNFIFTPTSIRDVIIVDTKQYGDARGYFMET
  54. YKASDFAAGGISTTFVQDNQSSSTKGVLRGLHFQIEHPQAKLVRVVRGCVFDVAVDLR
  55. AGSETFGAWEGVELSAENHRQFYIPRGFAHGFFVLSDEAEFCYKCDDVYHPGDEGGLM
  56. WNDPDLAISWPAPCGCDSFSPSQVILSDKDTHHESFAAYVQRTRG"
  57. /product="dTDP-4-dehydrorhamnose 3,5-epimerase (EC
  58. 5.1.3.13)"
  59. /EC_number="5.1.3.13"
  60. BASE COUNT 1077 a 1055 c 1036 g 1023 t
  61. ORIGIN
  62. 1 aatcgcgctt catgttgcaa catcgcatgg cgcgcgaagt tcatccaaaa gcgcagttct
  63. 61 caacacgagt gaatgtccaa gatagttagt gccttcaagc ccaatcatgc ttgctgcata
  64. 121 actcacgtga ggctttgtgc agccttgggg cgtgagctca tcttcatcaa catgtacaac
  65. 181 atcgcagggt gtaccttttg ctatgtgctg tgctaccgtt tgtgcaatat gccacagggc
  66. 241 atcgggcgtg ggagctgccc cctcactcat aatgtaaacg tacgggtttt gtataaacga
  67. 301 acatgcatac gcaagatacg agctatggtg cgcataatgg tcgcgagatg catcgataat
  68. 361 atcatctgta ggctgtgcta cgccagcagc atgcgcgcct gaatctgaca atgattcccc
  69. 421 agctacagct tggtttttct gtgattgttc cacgttcata cgcacataca taatgcgcgc
  70. 481 atcggtctta gtatagctat gaagccagcg tgcaatatct gtttgttggt tgggagtgcg
  71. 541 catgtgtgta caatcgagca cgataagctg ccatgccgga aaactctgat gtatcatcgc
  72. 601 gttaatactg cgcgcaagca gtgtagtcga tgctgaaaaa acgggcagta ccaccgaaat
  73. 661 acccatgtgt gcaagcgcat catcaaacga tgtctgtgca ggttgtgcag gttgcgcaag
  74. 721 ctggacaggt tgtgcaggct ggtcagcatg cgtggtgctc tcttcgcggt gttccataca
  75. 781 cgcgcacgcc tcttcgtacc tgcgtgtttg catagcgcac tgctcagacg tagctgcatg
  76. 841 ctcatcaaac cagcgctcat agtgaggatc gtgagcgcaa tcgcgactaa aacgctcggc
  77. 901 ctcagcaatg cgcgcggccg cagcagcagg aaaaatggta taaaaggctt cgtaggtaga
  78. 961 tgcagacgct ttttgcaacg cgcgggctcg atctccaccg tcgcagctca acgatgccac
  79. 1021 atgcttaaag ttgaggcgcg cgcacacaac agcatgcgtg cacgcgtgcg gcaatgcaat
  80. 1081 cgaaaacacc gcacgacgaa cgcattcagc gctgtcatcc ggaacagctg ccgtttgctc
  81. 1141 ttctagcgta attacacgtg cacgtatggg ctcacctgta ctgctcagca cgcagcagct
  82. 1201 tataggaaaa tattcaaacg caggcgaatt gtcgcaggta aaccgcgctt caaatcgcca
  83. 1261 tatacgcatc ggcacatcgg gagagtcgct tgtttgcgca gcggcattcc aaataccaat
  84. 1321 aagattaagc tgatggtgca catatgcagc actgtgaacg atgcggcgta gcaacgcggc
  85. 1381 cgcttgagga tggcggagcg taagtaaacg cgacatgtag cgcgacgtat gaggaccaaa
  86. 1441 aacaaacgac cacgtatcag aactcagacc ctgcgacgca cgtgttatgc tgagctcaac
  87. 1501 cacacaatca acgctcaaca gcggaataat aacaacccac cacgaccccg ttgcagcatc
  88. 1561 atcaatgctc gaacgaacgc catagagctc gtctaaacac acaagacgcg caggacacgg
  89. 1621 catattcgta tctttggtat gtgcatgcac tttaagcaat gcgggctttt cgcacagctg
  90. 1681 aatgcaggca aaccctgcgt tttcgccgcg gcaaaccatt tttaattgcg cgagtttcat
  91. 1741 gcagtcccct tactgttgtt aaagattaag cagcacgcgc acaacatgcg gctctgcggg
  92. 1801 cgcaagtcgt gtgcagcgcc tttttgagcg cttttggagc accttatccg cgtgtgcgtt
  93. 1861 gtacatacgc ggcaaacgat tcatgatggg tatctttatc agacaaaata acctgcgagg
  94. 1921 gcgaaaagct atcgcagcca caaggcgcag gccagctaat agcaagatcg ggatcgttcc
  95. 1981 acataaggcc accttcatcg cctggatgat acacgtcgtc gcacttatag caaaattctg
  96. 2041 cctcatctga gagtacaaaa aatccgtgag caaagccgcg cggtatatag aattgtcgat
  97. 2101 gattttcggc cgataattca acgccttccc atgcaccaaa ggtctctgaa cctgcgcgca
  98. 2161 agtctaccgc aacatcaaac acacagccac gcacaacacg aacgagtttt gcttgagggt
  99. 2221 gttcaatctg aaaatgcagg ccacgaagca cgccttttgt ggagctcgat tggttatcct
  100. 2281 gtacaaacgt agtagaaata ccacccgcag caaaatcgga tgctttgtac gtttccataa
  101. 2341 agtacccgcg cgcgtcacca tactgtttgg tatcaacaat aataacgtcg cgaatagatg
  102. 2401 taggtgtaaa aataaaattg cccgattgaa tagcctgaga tgtttctgta cgctgtgtca
  103. 2461 taccttaact cctttagcgc gcgctccttt agcgcacaaa tatgcgctaa cgaattgtgc
  104. 2521 aatacctgca acggtttatt tcattgtagc gcacgaatat acgcctacga tatgttcata
  105. 2581 caatgctacg gaaatgcaca cagcgcgaca caccgtgcgc ccgcaggcgc atctgccagt
  106. 2641 gcaatcttcc ttgccgccat gctacacgaa agaacaagtg cgcgccccaa tgatatgcag
  107. 2701 atttgctcaa aaatagaggt atacgtgctc aaagtacgca atggtgcggt atacttgcac
  108. 2761 agatatacca actttatgga gaactatgtc tgcaatatta gcaattgtgc ctgcatacaa
  109. 2821 cgagcagcag tgcatcgtca acaaaacgcg aaccaataac aacgtcggca cctgtttttt
  110. 2881 gcatgtgctc gtacatgggc acgatgtact cgggtttgtg ctgaccatcg gcatcaaatt
  111. 2941 gcacaactgc agaatagcca ttgcgctctg catatttcat gccagcttga acgcccgaag
  112. 3001 caaggccgca gttaatgggc acatttatgt agttaaaatg gcgcctacgg catatagctg
  113. 3061 cggtttcgtc gcgcgagccg tcgtttacaa taaggtagtc tacgccgggg cacacgcggc
  114. 3121 gcagctcatc gattgtttgt tgtatgcact gctgctcgtt gtatgcaggc acaattgcta
  115. 3181 atattgcaga catagttctc cataaagttg gtatatctgt gcaagtatac cgcaccattg
  116. 3241 cgtactttga gcacgtatac ctctattttt gagcaaatct gcatatcatt ggggcgcgca
  117. 3301 cttgttcttt cgtgtagcat ggcggcaagg aagattgcac tggcagatgc gcctgcgggc
  118. 3361 gcacggtgtg tcgcgctgtg tgcatttccg tagcattgta tgaacatatc gtaggcgtat
  119. 3421 attcgtgcgc tacaatgaaa taaaccgttg caggtattgc acaattcgtt agcgcatatt
  120. 3481 tgtgcgctaa aggagcgcgc gctaaaggag ttaaggtatg acacagcgta cagaaacatc
  121. 3541 tcaggctatt caatcgggca attttatttt tacacctaca tctattcgcg acgttattat
  122. 3601 tgttgatacc aaacagtatg gtgacgcgcg cgggtacttt atggaaacgt acaaagcatc
  123. 3661 cgattttgct gcgggtggta tttctactac gtttgtacag gataaccaat cgagctccac
  124. 3721 aaaaggcgtg cttcgtggcc tgcattttca gattgaacac cctcaagcaa aactcgttcg
  125. 3781 tgttgtgcgt ggctgtgtgt ttgatgttgc ggtagacttg cgcgcaggtt cagagacctt
  126. 3841 tggtgcatgg gaaggcgttg aattatcggc cgaaaatcat cgacaattct atataccgcg
  127. 3901 cggctttgct cacggatttt ttgtactctc agatgaggca gaattttgct ataagtgcga
  128. 3961 cgacgtgtat catccaggcg atgaaggtgg ccttatgtgg aacgatcccg atcttgctat
  129. 4021 tagctggcct gcgccttgtg gctgcgatag cttttcgccc tcgcaggtta ttttgtctga
  130. 4081 taaagatacc catcatgaat cgtttgccgc gtatgtacaa cgcacacgcg gataaggtgc
  131. 4141 tccaaaagcg ctcaaaaagg cgctgcacac gacttgcgcc cggcagagcc g
  132. //
Add Comment
Please, Sign In to add comment