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- source("http://bioconductor.org/biocLite.R")
- biocLite("org.Hs.eg.db")
- library("org.Hs.eg.db")
- # mapped_genes are all the genes that org.HS.egPMID covers (the HS refers to homosapien). These genes are in Entrez format.
- # entrez2Pmid is a list taking entrez gene ids to a vector of Pmids.
- mapped_genes <- mappedkeys(org.Hs.egPMID)
- entrez2Pmid <- as.list(org.Hs.egPMID[mapped_genes])
- # now if you have an entrez gene id you can look up the relevant papers by doing
- entrez2Pmid[myEntrezGene]
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