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Jan 16th, 2017
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  1. -------------- next part --------------
  2. ;
  3. ; NVE test run
  4. ;
  5. title = Dynamique de BPTI
  6. cpp = /lib/cpp
  7. constraints = none
  8. integrator = md
  9. dt = 0.001 ; ps !
  10. nsteps = 10000 ; total 10 ps.
  11. nstcomm = -1
  12. comm-mode = ANGULAR
  13. nstxout = 50
  14. nstvout = 1000
  15. nstfout = 0
  16. nstlog = 100
  17. nstenergy = 100
  18. nstlist = 1
  19. ns_type = simple
  20. rlist = 0.0
  21. rcoulomb = 0.0
  22. rvdw = 0.0
  23. ; Berendsen temperature coupling is on in two groups
  24. Tcoupl = no
  25. ;Tcoupl = berendsen
  26. tc-grps =
  27. tau_t =
  28. ref_t =
  29. ; Energy monitoring
  30. energygrps = Protein
  31. ; Isotropic pressure coupling is now on
  32. Pcoupl = no
  33. ; Generate velocites is off at 300 K.
  34. gen_vel = no
  35. gen_temp = 0.0
  36. gen_seed = 173529
  37.  
  38. pbc = no
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