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- -------------- next part --------------
- ;
- ; NVE test run
- ;
- title = Dynamique de BPTI
- cpp = /lib/cpp
- constraints = none
- integrator = md
- dt = 0.001 ; ps !
- nsteps = 10000 ; total 10 ps.
- nstcomm = -1
- comm-mode = ANGULAR
- nstxout = 50
- nstvout = 1000
- nstfout = 0
- nstlog = 100
- nstenergy = 100
- nstlist = 1
- ns_type = simple
- rlist = 0.0
- rcoulomb = 0.0
- rvdw = 0.0
- ; Berendsen temperature coupling is on in two groups
- Tcoupl = no
- ;Tcoupl = berendsen
- tc-grps =
- tau_t =
- ref_t =
- ; Energy monitoring
- energygrps = Protein
- ; Isotropic pressure coupling is now on
- Pcoupl = no
- ; Generate velocites is off at 300 K.
- gen_vel = no
- gen_temp = 0.0
- gen_seed = 173529
- pbc = no
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