Initial Install:

Action Menu
Action Menu Plus Pack
Activator
AppHide
Apple File Conduit “2”
Auris
Automa
AutoResponder
Auxo
Badge Customizer
BetterPowerDown
BIM
Bytafont
CC Deseperator
CCLoader
CCVolumeControl
Cercube
CleanSheets
CloudToButt
CocoaTop
Codling
ControlF
Copic
Cou
Couria
CustomCover
Cycript
DeleteForever
DetailedBatteryUsage
DismissProgress
DisplayRecorder
Dockshift
DoubleCut
Eclipse
Edit Alarms
EffacePad
Facebook++
Flame
Forecast
FullResShare
Fully Masked Passwords
Go.Away.Period.Button
GroupQuiet
HapticPro
HomeLock
HotDog
House arrest fix
iCleaner Pro
Icon Renamer
iFile
Inetutils
Infiniboard
Initialized
Insomnia
iTransmission
Kepo

Libstatusbar (efrederickson)

LockPredict
LowLSSlider
MessagePopper
Mikoto
Mix Toolbox
Möbius
MTerminal

Multiplexer

MusicMod
NC Date Customizer
NCIfNeeded
NES.emu
NoAutoDelete
NoEditMenuDelay
NoLockBounce
NoMoreMagnifier
NO PLS RECOVERY
NoSlowAnimations
NoSwitcherLabels
NoTabBarText
No Yahoo! & TWC
Nuntius
OpenSSH
PagedSwitcher
pincrush
PineappleSpinnerLS
PreferenceOrganizer
QuickActivator
QuickEmoji
Record 'n' Torch
ReturnDismiss
Roomy
RoundScreenCorners
Safari Downloader+
SafariSwiper
Safari Uploader 8


SafeAlarm 2


ScreenLock
Seeker
ShiftCycle
ShowAllChanges
SimplePasscodeButtons
Skippy
SleepyAlarm
SmoothPop
SnowSwitch
SoftOS
StatusBarTimer
StatusPeek
StatusVol
SuperSliders [local]
SwipeForMore
SwipeSelection Pro
SwipeToDeleteContact
TermPower
TetherMe
TetherStatus
TextSearch
ThinnerBanners
TimePaper
TimeUntilAlarm
TokeTime
Top
TranslateMe
Tweak Count
Twitter++
TypeStatus
Ubuntu light font
VideoPane
Wifi Booster
Winterboard
Xgress
3G Unrestrictor

-----------------------------------------------------

iPhone Only Tweaks:

Inbox Count [Incompatible with iPad]
Photo Booth for iPhone
Priority Hub [incompatible with iPad]
Safari Tab Count


iPad Only Tweaks For Future Reference:

iPhone native apps for iPad MAY NOT NEED THIS, REFER TO REDDIT
Live effects enabler
Slo-mo Mod