import os
import sys
import re
import FetchFastaFromGiListTR

print('happy')

file_list = []
for root, dirs, files in os.walk(sys.argv[1]):
    file_list = files
    for item in file_list:
        match = re.match(re.compile('Group([0-9]+[A-Z]*)DistinctGis.txt'),item)
        group_number = match.group(1)
        infile = open(os.path.join(root,item), 'r')
        Gi_Number_List = infile.readlines()
        for i in range(len(Gi_Number_List)):
            Gi_Number_List.append(Gi_Number_List[i].strip())
        import FetchFFastaFileFromGiListTR.fetch_sequences_for_gi(GI_Number_List)