preamble.sty

%!TEX root = thesis.tex
\ProvidesPackage{thesis-preamble}

%%% PACKAGES

\RequirePackage[T1]{fontenc} % sane font encoding
\RequirePackage{textcomp} % provide lots of new symbols
\RequirePackage{lmodern} % for sensible sans and tt font
\RequirePackage[sc,osf]{mathpazo}% for math
\RequirePackage{microtype}
\RequirePackage{pifont}
\newcommand\diameter{\Pisymbol{psy}{'306}}
\linespread{1.1} % Palatino needs more leading
\frenchspacing
\normalfont

\RequirePackage[utf8]{inputenc}% sane input encoding
\DeclareUnicodeCharacter{2014}{\dash}
\DeclareUnicodeCharacter{2022}{\item}

\RequirePackage[noload=abbr]{siunitx}
\protected\def\sipi{\mbox{\ensuremath{\pi}}}
\sisetup{numaddn=\sipi}

\RequirePackage{
  calc,
  colortbl,
  graphicx,
  epstopdf,
  etex,
  import,
  flafter,
  minibox,
  multicol,
  psfrag,
  refstyle,
  soul,
  suffix,
  varioref,
  xcolor,
  zref,
}
\RequirePackage[draft,inline,nomargin]{fixme}

\RequirePackage[
crop=pdfcrop,
ps2pdf-options={-dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress},
cleanup={.tex,.dvi,.ps,.pdf,.log,.aux,-blx.bib,%
         .nav,.out,.out.ps,.pfg,.snm,.toc,.mp}
]{pstool}
\RequirePackage[process=auto]{asyfig}
\RequirePackage[inline]{asymptote}
\renewcommand\asydir{asy/}

\RequirePackage{caption}
\captionsetup[table]{position=top}

\RequirePackage{csquotes}
\MakeOuterQuote{"}

%% Hyperref
\RequirePackage[ocgcolorlinks,breaklinks,
          plainpages=false,pdfpagelabels,linktocpage]{hyperref}
\hypersetup{linkcolor=black,citecolor=black,filecolor=black,urlcolor=black}

\definecolor{darkred}{rgb}{0.4,0,0}
\definecolor{darkgreen}{rgb}{0,0.4,0}
\definecolor{darkblue}{rgb}{0,0,0.4}
\hypersetup{
linkcolor=darkred,
citecolor=darkblue,
filecolor=black,
urlcolor=black
}
\AtBeginDocument{\hypersetup{pdfauthor={\@author},pdftitle={\@title}}}


\@ifpackageloaded{hyperref}{}{%
\PackageError{hyperref}{I am not loaded!}
  {\string\pdfdef\space requires hyperref.}}
\def\pdfdef#1{%
\def\@tempa{#1}%
\afterassignment\@pdfdef
\expandafter\def\csname pdfdef@\string#1\endcsname}
\def\@pdfdef{%
  \expandafter\expandafter\expandafter\pdfstringdefDisableCommands
  \expandafter\expandafter\expandafter{%
  \expandafter\expandafter\expandafter\let\expandafter\@tempa
    \csname pdfdef@\expandafter\string\@tempa\endcsname}}

\RequirePackage[open,openlevel=4]{bookmark}
\RequirePackage{hypcap}

%% biblatex
\usepackage[
  hyperref,backref,sortcites,
  defernums=true,
  date=short,
  bibencoding=inputenc,
  maxnames=3,
  minnames=2,
  firstinits=true,
  sorting=nyt,
  bibstyle=numeric,
  citestyle=numeric-comp,
]{biblatex}
\def\bibfont{\small}
\bibliography{journals,phd,library}
\renewcommand\bibname{References}


%%%%%%%%%%%%%%%%%%%%

%% MATHS
\RequirePackage{amsmath,amssymb,bm,cool}
\RequirePackage{mlist}
%\RequirePackage{thesis-maths}
\@ifpackageloaded{mathpazo}{\PassOptionsToPackage{mathpazo}{flexisym}}{}
\@ifpackageloaded{mathptmx}{\PassOptionsToPackage{mathptmx}{flexisym}}{}
\RequirePackage{breqn}
\setkeys{breqn}{labelprefix=eq:}

%%%%%%%%%%%%%%%%%
%%% FIGURES

\def\phdpath{}
\asypath{\phdpath Figures/}
\def\coilpath{\phdpath Coil/fig/}

\newcommand\grf[2][]{\includegraphics[#1]{\phdpath #2}}

\newcommand\ImportIfFileExists[4]{%
  \IfFileExists{#1#2}
    {\import{#1}{#2}#3}
    {#4}}

% Symmetric ragged commands
\newcommand\IfOddPage{%
  \checkoddpage
  \ifoddpage\expandafter\@firstoftwo
  \else\expandafter\@secondoftwo\fi}
\newcommand\raggedout{\IfOddPage\raggedright\raggedleft}
\newcommand\raggedin{\IfOddPage\raggedleft\raggedright}

% Subfigures
\newsubfloat{figure}
\newenvironment{subfigure}[1][0.4]{%
  \begin{minipage}[t]{#1\linewidth}
    \centering
    \let\caption\subcaption
}{%
  \end{minipage}%
}
\newenvironment{sidefigure}[1][0.4]{%
  \begin{minipage}[t]{#1\linewidth}
    \centering
}{%
  \end{minipage}%
}

% wide:
\newenvironment{wide}{%
  \strictpagecheck
  \begin{adjustwidth*}{0pt}{-\marginparsep-\marginparwidth}
    \raggedout
}{%
  \end{adjustwidth*}%
}

%% Force font sizes in MathPSfrag & matlabfrag:
\def\PFGstyle{\footnotesize}
\def\matlabtextA{\footnotesize}
\def\matlabtextB{\footnotesize}
\def\matlabtextC{\footnotesize}

%%
\newcommand\gridIV[5][1em]{%
  #2\hspace{#1}#3\\
  [#1]#4\hspace{#1}#5}
\newcommand\gridVI[7][0.5em]{%
  #2\hspace{#1}#3\hspace{#1}#4\\[#1]
  #5\hspace{#1}#6\hspace{#1}#7}



\strictpagecheck

% Make maths use lining numbers: (old-style look bad most-times)
\DeclareMathSymbol{0}{0}{letters}{'060}
\DeclareMathSymbol{1}{0}{letters}{'061}
\DeclareMathSymbol{2}{0}{letters}{'062}
\DeclareMathSymbol{3}{0}{letters}{'063}
\DeclareMathSymbol{4}{0}{letters}{'064}
\DeclareMathSymbol{5}{0}{letters}{'065}
\DeclareMathSymbol{6}{0}{letters}{'066}
\DeclareMathSymbol{7}{0}{letters}{'067}
\DeclareMathSymbol{8}{0}{letters}{'070}
\DeclareMathSymbol{9}{0}{letters}{'071}

%%%%%%%%%%%%%
%! FLOATS
\renewcommand{\topfraction}{.8}
\renewcommand{\bottomfraction}{.3}
\renewcommand{\textfraction}{.15}
\renewcommand{\floatpagefraction}{.66}
\renewcommand{\dbltopfraction}{.66}
\renewcommand{\dblfloatpagefraction}{.66}
\setcounter{topnumber}{9}
\setcounter{bottomnumber}{9}
\setcounter{totalnumber}{20}
\setcounter{dbltopnumber}{9}

\renewenvironment{figure}[1][\fps@figure]
                 {\edef\@tempa{\noexpand\@float{figure}[#1]}
                  \@tempa\capstart\centering}
                 {\end@float}
\renewenvironment{table}[1][\fps@table]
                 {\edef\@tempa{\noexpand\@float{table}[#1]}
                  \@tempa\capstart\centering}
                 {\end@float}


%% Floats & captions
\captionnamefont{\scshape}
%\setlength\captionwidth{0.9\linewidth}
%\changecaptionwidth

\newcommand\lofcaption[2]{\caption[#1]{#1#2}}
\DeclareRobustCommand\periodifnocomma{\@ifnextchar,{}{.}}

%%%%%%%%%%%%
% These are the varioref definitions:
% \newcommand{\varioprefix}{See~}
% \newcommand{\myvariohook}[1]{\marginpar{\small\centering \varioprefix #1}}
% \def\reftextcurrent{}
% \def\reftextfaceafter{}
% \def\reftextfacebefore{}
% \def\reftextafter{~on the \reftextvario{following}{next} page}
% \def\reftextbefore{~on the \reftextvario{previous page}{preceding page}}
% \def\reftextafter{}
% \def\reftextbefore{}
% \def\reftextfaraway#1{\myvariohook{p.\,\pageref{#1}}}
% \def\reftextpagerange#1#2{\myvariohook{pp.\,\pageref{#1}--\pageref{#2}}}

%%%%%%%%%%%%%%%%%%%%%
%! MEMOIR CUSTOMISE

\maxsecnumdepth{subsection} % number  subsections
\maxtocdepth{subsection}    % include subsections in ToC

\renewcommand{\cftchapterpagefont}{}
\renewcommand{\cftchapterfont}{}     % no bold!
\renewcommand\cftdotsep{999} % no dots

% for page numbers:
\newcommand\thesispage{\normalfont p.\,\thepage}

%%% CHAPTERS
\makechapterstyle{wspr}{%
  \setlength\beforechapskip{0pt}
  \setlength\midchapskip{0pt}
  \setlength\afterchapskip{40pt}
  \renewcommand\chapnamefont{%
    \normalfont\centering\large\scshape\MakeLowercase}
  \renewcommand\chapnumfont{%
    \normalfont\centering\fontsize{60pt}{0pt}\selectfont}
  \renewcommand\chaptitlefont{%
    \normalfont\HUGE\bfseries\centering}
  \renewcommand\printchaptername{%
    \marginpar{\chapnamefont{\@chapapp}}}
  \renewcommand\chapternamenum{}
  \renewcommand\printchapternum{%
    \marginpar{\chapnumfont\thechapter}}
    \makeoddfoot{plain}{}{\thesispage}{}
}
\chapterstyle{wspr}


%%% SECTIONS
\newcommand\marginnum[2]{%
  \noindent
  \let\@tempa\relax
  \savebox\@tempboxa{#2}%
  %\null\marginpar{#1\@tempa}%
  #1\@tempa\quad#2}

\def\secstyle{\centering\scshape}
\def\subsecstyle{\centering\itshape}
\def\subsubsecstyle{\centering\small\itshape}

\setsecheadstyle{\marginnum\secstyle}
\setsubsecheadstyle{\marginnum\subsecstyle}
\setsubsubsecheadstyle{\marginnum\subsubsecstyle}

\setsecnumformat{\unexpanded{%
  \protected@xdef\@tempa{{\upshape\S\csname the#1\endcsname}}}}

%%%%%

\def\printtoctitle#1{\section*{#1}}

%%%%%

%% Page headers
\setlength{\headheight}{\baselineskip}
\setlength{\headwidth}{\textwidth+\marginparsep+0.5\marginparwidth}
\makepagestyle{wspr}
\makepsmarks{wspr}{%
  \let\@mkboth\markboth%
  \def\chaptermark##1{%
    \markboth{%
      \if@mainmatter
        \textsc{Chapter \thechapter:} %
      \fi
      ##1}{##1}}%
  \def\sectionmark##1{%
    \markright{%
      \if@mainmatter
        \textsc{\S\thesection:} %
      \fi
      ##1}}}
\makerunningwidth{wspr}{\headwidth}
\makeheadposition{wspr}{flushright}{flushleft}{}{}
\makeevenhead{wspr}{\makebox[0pt][c]{\thesispage}} {} {\small\leftmark}
\makeoddhead{wspr} {\small\rightmark}              {} {\thesispage}
\pagestyle{wspr}


%%% LISTS
\renewcommand*{\descriptionlabel}[1]{\hspace\labelsep\normalfont\itshape #1}
\tightlists

\newif   \ifshorttoc
\newenvironment {hideshorttoc} {
  \addtocontents{toc}{ \protect\ifshorttoc \protect\else }
}{
  \addtocontents{toc}{ \protect\fi }
}

\newcommand*{\setupshorttoc}{%
  \shorttoctrue
  \renewcommand*{\contentsname}{Short contents}
  \let\oldchangetocdepth\changetocdepth
  \renewcommand{\precistoctext}[1]{%
    \nobreak
    \begin{quote}
      \leftskip    = 0cm plus  0.5fil
      \rightskip   = 0cm plus -0.5fil
      \parfillskip = 0cm plus    1fil
      \footnotesize ##1
    \end{quote}
  }
  \let\oldcftchapterfillnum\cftchapterfillnum
  \renewcommand*{\changetocdepth}[1]{}
  \setcounter{tocdepth}{0}% chapters
  %
  \renewcommand*{\cftchapterfont}{\hfill}
  \renewcommand*{\cftchapterfillnum}[1]{%
    \quad \nobreak p.\,##1\hfill \null \par
  }
  %
  \renewcommand*{\cftpartfont}{\hfill \bfseries}
  \renewcommand*{\cftpartfillnum}[1]{\hfill\null\par}
}

\newcommand*{\setupparasubsecs}{%
  \shorttocfalse
  \let\oldnumberline\numberline
  \renewcommand \cftsubsectionfont     {\small}
  \renewcommand \cftsubsectionpagefont {\upshape\small}
  \renewcommand \l@subsection [2] {%
    \ifnum\c@tocdepth > 1
      \def\numberline####1{\parsesubsection####1\@nil}%
      \leftskip=\cftsubsectionindent
      \rightskip=\@tocrmarg
      \advance\rightskip 0pt plus 2em
      \parfillskip=\fill
      \ifhmode
        \unskip\unskip\unskip\unskip\unskip\unskip\unskip\unskip \unskip\unskip\unskip\unskip\unskip\unskip\unskip\unskip\,,\space
      \else
        \noindent
      \fi
      \ignorespaces
      {\cftsubsectionfont ##1}~{\cftsubsectionpagefont##2}%
       \let\numberline\oldnumberline\expandafter\ignorespaces
    \fi
  }%
}

\def\parsesubsection#1.#2.#3\@nil{#3 \itshape}

\AtEndDocument{\addtocontents{toc}{\par}}%%% OK

\newcommand*{\setupmaintoc}{%
  \renewcommand{\contentsname}{Contents}
  \let\changetocdepth\oldchangetocdepth
  \renewcommand{\precistoctext}[1]{}
  \let\cftchapterfillnum\oldcftchapterfillnum
  \addtodef{\cftchapterbreak}{\par}{}
  \renewcommand*{\cftchapterfont}{\normalfont}
  \renewcommand*{\cftchapterleader}{\cftdotfill{\cftchapterdotsep}}
  \renewcommand*{\cftchapterafterpnum}{}
  \renewcommand{\cftchapterbreak}{\par\addpenalty{-\@highpenalty}}
  \setpnumwidth{2.55em}
  \setrmarg{3.55em}
  \setcounter{tocdepth}{2}
  \let\cftpartformatpnum\oldcftpartformatpnum
  \addtodef{\cftpartbreak}{\par}{}
  \let\cftbookformatpnum\oldcftbookformatpnum
  \addtodef{\cftbookbreak}{\par}{}
}

\renewcommand\chapterprecistoc[1]{%
  \addtocontents{toc}{\protect\precistoctext{#1}}%
}

\renewcommand\chapterprecishere[1]{}