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(tardis-devel)➜  tardis git:(montecarlo/fix_compile) ✗ ASTROPY_USE_SYSTEM_PYTEST=1 python setup.py test --args='--ipdb'
running test
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-2.7
creating build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/_astropy_init.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/analysis.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/atomic.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/conftest.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/core.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/cython_version.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/gui.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/model.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/packet_source.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/parallel.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/plasma_array.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/setup_package.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/simulation.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/util.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
copying tardis/version.py -> build/lib.macosx-10.9-x86_64-2.7/tardis
creating build/lib.macosx-10.9-x86_64-2.7/tardis/io
copying tardis/io/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io
copying tardis/io/config_reader.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io
copying tardis/io/config_validator.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io
copying tardis/io/model_reader.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io
copying tardis/io/setup_package.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io
copying tardis/io/util.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io
creating build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/setup_package.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_atomic.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_lte_plasma.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_montecarlo.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_plasma_nlte.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_plasma_simple.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_tardis_full.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
copying tardis/tests/test_util.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
creating build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests
copying tardis/io/tests/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests
copying tardis/io/tests/test_ascii_readers.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests
copying tardis/io/tests/test_config_reader.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests
copying tardis/io/tests/test_config_validator.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests
copying tardis/io/tests/test_configuration_namespace.py -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests
creating build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/atom_data.h5 -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/atomic_symbols.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/density_sets.h5 -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/lucy99_general_default.ini -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/synpp_default.yaml -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/tardis_config_definition.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/data/tardis_example_config.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/data
copying tardis/./cmontecarlo.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/.
copying tardis/./macro_atom.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/.
copying tardis/./montecarlo.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/.
creating build/lib.macosx-10.9-x86_64-2.7/tardis/randomkit
copying tardis/randomkit/rk_isaac.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/randomkit
copying tardis/randomkit/rk_mt.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/randomkit
copying tardis/randomkit/rk_primitive.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/randomkit
copying tardis/randomkit/rk_sobol.c -> build/lib.macosx-10.9-x86_64-2.7/tardis/randomkit
copying tardis/tests/coveragerc -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests
creating build/lib.macosx-10.9-x86_64-2.7/tardis/tests/data
copying tardis/tests/data/chianti_he_db.h5 -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests/data
copying tardis/tests/data/He_nlte_pops.h5 -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests/data
copying tardis/tests/data/simple_test_spectrum.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/tests/data
creating build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/abund.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/artis_abundances.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/artis_model.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/density.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_simple_ascii_density_test.dat -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/conf_def.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/conf_tes.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/paper1_tardis_configv1.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_artis_density.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_artis_density_v_slice.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_ascii_density.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_ascii_density_abund.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_ascii_density_uniabund.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_density_exponential_test.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_density_power_law_test.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_uniform_density.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
copying tardis/io/tests/data/tardis_configv1_verysimple.yml -> build/lib.macosx-10.9-x86_64-2.7/tardis/io/tests/data
running build_ext
skipping 'tardis/montecarlo.c' Cython extension (up-to-date)
building 'tardis.montecarlo' extension
creating build/temp.macosx-10.9-x86_64-2.7
creating build/temp.macosx-10.9-x86_64-2.7/tardis
creating build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Itardis/randomkit -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/montecarlo.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/montecarlo.o
In file included from tardis/montecarlo.c:346:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning:
      "Using deprecated NumPy API, disable it by "          "#defining
      NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
In file included from tardis/montecarlo.c:347:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:327:
/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning:
      unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
tardis/montecarlo.c:8582:28: warning: unused function
      '__Pyx_PyObject_AsString' [-Wunused-function]
static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
                           ^
tardis/montecarlo.c:8579:32: warning: unused function
      '__Pyx_PyUnicode_FromString' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char...
                               ^
tardis/montecarlo.c:410:29: warning: unused function
      '__Pyx_Py_UNICODE_strlen' [-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UN...
                            ^
tardis/montecarlo.c:8701:33: warning: unused function
      '__Pyx_PyIndex_AsSsize_t' [-Wunused-function]
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
                                ^
tardis/montecarlo.c:8730:33: warning: unused function
      '__Pyx_PyInt_FromSize_t' [-Wunused-function]
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^
tardis/montecarlo.c:6993:26: warning: unused function
      '__Pyx_PyUnicode_Equals' [-Wunused-function]
static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, P...
                         ^
tardis/montecarlo.c:7107:32: warning: unused function
      '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObj...
                               ^
tardis/montecarlo.c:7121:32: warning: unused function
      '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyOb...
                               ^
tardis/montecarlo.c:7828:48: warning: unused function
      '__pyx_t_float_complex_from_parts' [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_co...
                                               ^
tardis/montecarlo.c:7838:30: warning: unused function '__Pyx_c_eqf'
      [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex ...
                             ^
tardis/montecarlo.c:7841:48: warning: unused function '__Pyx_c_sumf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__p...
                                               ^
tardis/montecarlo.c:7847:48: warning: unused function '__Pyx_c_difff'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__...
                                               ^
tardis/montecarlo.c:7859:48: warning: unused function '__Pyx_c_quotf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__...
                                               ^
tardis/montecarlo.c:7866:48: warning: unused function '__Pyx_c_negf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__p...
                                               ^
tardis/montecarlo.c:7872:30: warning: unused function
      '__Pyx_c_is_zerof' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_com...
                             ^
tardis/montecarlo.c:7875:48: warning: unused function '__Pyx_c_conjf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__...
                                               ^
tardis/montecarlo.c:7889:52: warning: unused function '__Pyx_c_powf'
      [-Wunused-function]
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf...
                                                   ^
tardis/montecarlo.c:7948:49: warning: unused function
      '__pyx_t_double_complex_from_parts' [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_...
                                                ^
tardis/montecarlo.c:7958:30: warning: unused function '__Pyx_c_eq'
      [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex ...
                             ^
tardis/montecarlo.c:7961:49: warning: unused function '__Pyx_c_sum'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__p...
                                                ^
tardis/montecarlo.c:7967:49: warning: unused function '__Pyx_c_diff'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__...
                                                ^
tardis/montecarlo.c:7979:49: warning: unused function '__Pyx_c_quot'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__...
                                                ^
tardis/montecarlo.c:7986:49: warning: unused function '__Pyx_c_neg'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__p...
                                                ^
tardis/montecarlo.c:7992:30: warning: unused function '__Pyx_c_is_zero'
      [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_com...
                             ^
tardis/montecarlo.c:7995:49: warning: unused function '__Pyx_c_conj'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__...
                                                ^
tardis/montecarlo.c:8009:53: warning: unused function '__Pyx_c_pow'
      [-Wunused-function]
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow...
                                                    ^
tardis/montecarlo.c:8188:27: warning: function '__Pyx_PyInt_As_long' is
      not needed and will not be emitted
      [-Wunneeded-internal-declaration]
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^
tardis/montecarlo.c:4609:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew1' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/montecarlo.c:4659:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew2' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/montecarlo.c:4709:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew3' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/montecarlo.c:4759:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew4' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/montecarlo.c:4809:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew5' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/montecarlo.c:5563:27: warning: unused function
      '__pyx_f_5numpy_set_array_base' [-Wunused-function]
static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArray...
                          ^
tardis/montecarlo.c:5651:32: warning: unused function
      '__pyx_f_5numpy_get_array_base' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(Py...
                               ^
36 warnings generated.
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Itardis/randomkit -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/cmontecarlo.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/cmontecarlo.o
tardis/cmontecarlo.c:77:10: warning: unused variable 'result'
      [-Wunused-variable]
  double result;
         ^
tardis/cmontecarlo.c:141:42: warning: format specifies type 'int' but
      the argument has type 'int64_t' (aka 'long long') [-Wformat]
          fprintf(stderr, "cur_zone_id = %d\n", cur_zone_id);
                                         ~~     ^~~~~~~~~~~
                                         %lld
tardis/cmontecarlo.c:165:7: warning: variable 'emit' is used
      uninitialized whenever function 'macro_atom' is called
      [-Wsometimes-uninitialized]
  int emit, i = 0;
  ~~~~^~~~
tardis/cmontecarlo.c:168:10: note: uninitialized use occurs here
  while (emit != -1)
         ^~~~
tardis/cmontecarlo.c:165:11: note: initialize the variable 'emit' to
      silence this warning
  int emit, i = 0;
          ^
           = 0
tardis/cmontecarlo.c:275:1: warning: control reaches end of non-void
      function [-Wreturn-type]
}
^
tardis/cmontecarlo.c:506:10: warning: unused variable 'nu_line'
      [-Wunused-variable]
  double nu_line;
         ^
tardis/cmontecarlo.c:515:8: warning: unused variable 'close_line'
      [-Wunused-variable]
  bool close_line;
       ^
6 warnings generated.
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Itardis/randomkit -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/randomkit/rk_isaac.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_isaac.o
tardis/randomkit/rk_isaac.c:34:19: warning: unused variable 'rcsid'
      [-Wunused-const-variable]
static char const rcsid[] =
                  ^
1 warning generated.
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Itardis/randomkit -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/randomkit/rk_mt.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_mt.o
tardis/randomkit/rk_mt.c:38:19: warning: unused variable 'rcsid'
      [-Wunused-const-variable]
static char const rcsid[] =
                  ^
1 warning generated.
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Itardis/randomkit -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/randomkit/rk_primitive.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_primitive.o
tardis/randomkit/rk_primitive.c:29:19: warning: unused variable 'rcsid'
      [-Wunused-const-variable]
static char const rcsid[] =
                  ^
1 warning generated.
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Itardis/randomkit -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/randomkit/rk_sobol.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_sobol.o
tardis/randomkit/rk_sobol.c:31:19: warning: unused variable 'rcsid'
      [-Wunused-const-variable]
static char const rcsid[] =
                  ^
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -L/opt/local/lib -Wl,-headerpad_max_install_names -L/opt/local/lib/db46 build/temp.macosx-10.9-x86_64-2.7/tardis/montecarlo.o build/temp.macosx-10.9-x86_64-2.7/tardis/cmontecarlo.o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_isaac.o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_mt.o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_primitive.o build/temp.macosx-10.9-x86_64-2.7/tardis/randomkit/rk_sobol.o -o build/lib.macosx-10.9-x86_64-2.7/tardis/montecarlo.so
skipping 'tardis/macro_atom.c' Cython extension (up-to-date)
building 'tardis.macro_atom' extension
/usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tardis/macro_atom.c -o build/temp.macosx-10.9-x86_64-2.7/tardis/macro_atom.o
In file included from tardis/macro_atom.c:346:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning:
      "Using deprecated NumPy API, disable it by "          "#defining
      NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
In file included from tardis/macro_atom.c:346:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning:
      unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from tardis/macro_atom.c:347:
In file included from /Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:327:
/Users/wkerzend/.virtualenvs/tardis-devel/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning:
      unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
tardis/macro_atom.c:20187:32: warning: unused function
      '__Pyx_PyUnicode_FromString' [-Wunused-function]
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(char...
                               ^
tardis/macro_atom.c:412:29: warning: unused function
      '__Pyx_Py_UNICODE_strlen' [-Wunused-function]
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UN...
                            ^
tardis/macro_atom.c:20338:33: warning: unused function
      '__Pyx_PyInt_FromSize_t' [-Wunused-function]
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
                                ^
tardis/macro_atom.c:17948:1: warning: unused function
      '__pyx_add_acquisition_count_locked' [-Wunused-function]
__pyx_add_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
^
tardis/macro_atom.c:17958:1: warning: unused function
      '__pyx_sub_acquisition_count_locked' [-Wunused-function]
__pyx_sub_acquisition_count_locked(__pyx_atomic_int *acquisition_count,
^
tardis/macro_atom.c:18465:32: warning: unused function
      '__Pyx_GetItemInt_List_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObj...
                               ^
tardis/macro_atom.c:18479:32: warning: unused function
      '__Pyx_GetItemInt_Tuple_Fast' [-Wunused-function]
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyOb...
                               ^
tardis/macro_atom.c:19275:48: warning: unused function
      '__pyx_t_float_complex_from_parts' [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_co...
                                               ^
tardis/macro_atom.c:19285:30: warning: unused function '__Pyx_c_eqf'
      [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex ...
                             ^
tardis/macro_atom.c:19288:48: warning: unused function '__Pyx_c_sumf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__p...
                                               ^
tardis/macro_atom.c:19294:48: warning: unused function '__Pyx_c_difff'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__...
                                               ^
tardis/macro_atom.c:19306:48: warning: unused function '__Pyx_c_quotf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__...
                                               ^
tardis/macro_atom.c:19313:48: warning: unused function '__Pyx_c_negf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__p...
                                               ^
tardis/macro_atom.c:19319:30: warning: unused function
      '__Pyx_c_is_zerof' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_com...
                             ^
tardis/macro_atom.c:19322:48: warning: unused function '__Pyx_c_conjf'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__...
                                               ^
tardis/macro_atom.c:19336:52: warning: unused function '__Pyx_c_powf'
      [-Wunused-function]
        static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf...
                                                   ^
tardis/macro_atom.c:19395:49: warning: unused function
      '__pyx_t_double_complex_from_parts' [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_...
                                                ^
tardis/macro_atom.c:19405:30: warning: unused function '__Pyx_c_eq'
      [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex ...
                             ^
tardis/macro_atom.c:19408:49: warning: unused function '__Pyx_c_sum'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__p...
                                                ^
tardis/macro_atom.c:19414:49: warning: unused function '__Pyx_c_diff'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__...
                                                ^
tardis/macro_atom.c:19426:49: warning: unused function '__Pyx_c_quot'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__...
                                                ^
tardis/macro_atom.c:19433:49: warning: unused function '__Pyx_c_neg'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__p...
                                                ^
tardis/macro_atom.c:19439:30: warning: unused function
      '__Pyx_c_is_zero' [-Wunused-function]
    static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_com...
                             ^
tardis/macro_atom.c:19442:49: warning: unused function '__Pyx_c_conj'
      [-Wunused-function]
    static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__...
                                                ^
tardis/macro_atom.c:19456:53: warning: unused function '__Pyx_c_pow'
      [-Wunused-function]
        static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow...
                                                    ^
tardis/macro_atom.c:19696:27: warning: function '__Pyx_PyInt_As_char'
      is not needed and will not be emitted
      [-Wunneeded-internal-declaration]
static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) {
                          ^
tardis/macro_atom.c:19796:27: warning: function '__Pyx_PyInt_As_long'
      is not needed and will not be emitted
      [-Wunneeded-internal-declaration]
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
                          ^
tardis/macro_atom.c:3647:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew1' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/macro_atom.c:3697:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew2' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/macro_atom.c:3747:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew3' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/macro_atom.c:3797:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew4' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/macro_atom.c:3847:32: warning: unused function
      '__pyx_f_5numpy_PyArray_MultiIterNew5' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIter...
                               ^
tardis/macro_atom.c:4601:27: warning: unused function
      '__pyx_f_5numpy_set_array_base' [-Wunused-function]
static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArray...
                          ^
tardis/macro_atom.c:4689:32: warning: unused function
      '__pyx_f_5numpy_get_array_base' [-Wunused-function]
static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(Py...
                               ^
37 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -L/opt/local/lib -Wl,-headerpad_max_install_names -L/opt/local/lib/db46 build/temp.macosx-10.9-x86_64-2.7/tardis/macro_atom.o -o build/lib.macosx-10.9-x86_64-2.7/tardis/macro_atom.so
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/tardis -> build/scripts-2.7
changing mode of build/scripts-2.7/tardis from 644 to 755
WARNING: ConfigurationDefaultMissingWarning: Requested default configuration file tardis/tardis.cfg is not a file. Cannot install default profile. If you are importing from source, this is expected. [tardis._astropy_init]
========================= test session starts =========================
platform darwin -- Python 2.7.8 -- py-1.4.20 -- pytest-2.5.2

Running tests with Astropy version 0.3.2.
Running tests in tardis /Users/wkerzend/scripts/python/tardis/docs.

Platform: Darwin-13.3.0-x86_64-i386-64bit

Executable: /Users/wkerzend/.virtualenvs/tardis-devel/bin/python

Full Python Version:
2.7.8 (default, Jul 13 2014, 17:11:32)
[GCC 4.2.1 Compatible Apple LLVM 5.1 (clang-503.0.40)]

encodings: sys: ascii, locale: UTF-8, filesystem: utf-8, unicode bits: 15
byteorder: little
float info: dig: 15, mant_dig: 15

Numpy: 1.8.1
Scipy: 0.13.3
Matplotlib: 1.3.1
h5py: 2.4.0a0

plugins: cache, cov, ipdb, pep8
collected 103 items / 2 errors

tardis/io/tests/test_ascii_readers.py .......
tardis/io/tests/test_config_reader.py ...........................
tardis/io/tests/test_config_validator.py ........................
tardis/io/tests/test_configuration_namespace.py .........
tardis/tests/test_atomic.py .....
tardis/tests/test_lte_plasma.py ssssssssss
tardis/tests/test_plasma_nlte.py .....
tardis/tests/test_plasma_simple.py .
tardis/tests/test_util.py ...............

=============================== ERRORS ================================
__________ ERROR collecting tardis/tests/test_montecarlo.py ___________
tardis/tests/test_montecarlo.py:2: in <module>
>   from tardis import montecarlo
E   ImportError: dlopen(tardis/montecarlo.so, 2): Symbol not found: _compute_distance2line
E     Referenced from: tardis/montecarlo.so
E     Expected in: flat namespace
E    in tardis/montecarlo.so
__________ ERROR collecting tardis/tests/test_tardis_full.py __________
tardis/tests/test_tardis_full.py:5: in <module>
>   from tardis import io, model, simulation
tardis/model.py:13: in <module>
>   import montecarlo
E   ImportError: dlopen(tardis/montecarlo.so, 2): Symbol not found: _compute_distance2line
E     Referenced from: tardis/montecarlo.so
E     Expected in: flat namespace
E    in tardis/montecarlo.so
=========== 93 passed, 10 skipped, 2 error in 26.73 seconds ===========