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- hlw@skarrow:~/khmer/scripts/ $ python normalize-by-median.py -f -k 17 -x 1 ../tests/test-data/test-fastq-reads.fq
- || This is the script 'normalize-by-median.py' in khmer.
- || You are running khmer version 1.1-117-g2482a3e
- || You are also using screed version 0.7
- ||
- || If you use this script in a publication, please cite EACH of the following:
- ||
- || * MR Crusoe et al., 2014. doi: 10.6084/m9.figshare.979190
- || * CT Brown et al., arXiv:1203.4802 [q-bio.GN]
- ||
- || Please see the CITATION file for details.
- PARAMETERS:
- - kmer size = 17 (-k)
- - n tables = 4 (-N)
- - min tablesize = 1 (-x)
- Estimated memory usage is 4 bytes (n_tables x min_tablesize)
- --------
- making k-mer counting table
- DONE with ../tests/test-data/test-fastq-reads.fq; kept 6 of 100 or 6%
- output in test-fastq-reads.fq.keep
- fp rate estimated to be 1.000
- **
- ** ERROR: the k-mer counting table is too small for this data set. Increase tablesize/# tables.
- **
- ** Do not use these results!!
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