#!/bin/bash

convert animation.gif +adjoin tmp_%04d.png

j=0
for i in $(ls tmp_*.png); do
  if [ $(identify -verbose $i | grep Colors: | awk '{ print $2; }') != "1" ]; then
    cp $i select_$(printf %04d $j).png;
    (( j++ ))
  fi
done

montage $(ls select_*) -tile x1 -geometry '1x1+0+0<' -alpha On -background 'rgba(0, 0, 0, 0.0)' -quality 100 result.png