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Verbose => 1

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Aug 12th, 2010
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Perl 1.04 KB | None | 0 0
  1. With -verbose => 1
  2.  
  3. ------------- EXCEPTION: Bio::Root::Exception -------------
  4. MSG: /usr/local/blast+/bin/blastn call crashed: There was a problem running /usr
  5. /local/blast+/bin/blastn : BLAST Database error: Nucleotide BLAST database './nt
  6. ' does not exist in the NCBI servers
  7.  
  8. STACK: Error::throw
  9. STACK: Bio::Root::Root::throw /home/lupey/downloads/bioperl/bioperl-live/Bio/Roo
  10. t/Root.pm:472
  11. STACK: Bio::Tools::Run::WrapperBase::_run /home/lupey/downloads/bioperl/bioperl-
  12. live/Bio/Tools/Run/WrapperBase/CommandExts.pm:1012
  13. STACK: Bio::Tools::Run::StandAloneBlastPlus::AUTOLOAD /home/lupey/downloads/biop
  14. erl/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus.pm:1303
  15. STACK: Bio::Tools::Run::StandAloneBlastPlus::run /home/lupey/downloads/bioperl/b
  16. ioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:264
  17. STACK: Bio::Tools::Run::StandAloneBlastPlus::AUTOLOAD /home/lupey/downloads/biop
  18. erl/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus.pm:1301
  19. STACK: ./myblastplus.pl:10
  20. -----------------------------------------------------------
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