<?/** suppose we have 1 hour and 1 minute inteval 01:01 */

$interval_source = "01:01";
$time_now = strtotime( "now" ) / 60;
$interval = substr($interval_source,0,2) * 60 + substr($interval_source,3,2);


if( $time_now % $interval == 0){
/** do cronjob */
}