ffmpeg -ss 00:00:04 -i GOPR0090.MP4 -vf crop=200:500:200:350,transpose=1 edit1.mp4 -ss 00:00:02
FFmpeg version SVN-r0.5.9-4:0.5.9-0ubuntu0.10.04.3, Copyright (c) 2000-2009 Fabrice Bellard, et al.
  configuration: --extra-version=4:0.5.9-0ubuntu0.10.04.3 --prefix=/usr --enable-avfilter --enable-avfilter-lavf --enable-vdpau --enable-bzlib --enable-libgsm --enable-libschroedinger --enable-libspeex --enable-libtheora --enable-libvorbis --enable-pthreads --enable-zlib --disable-stripping --disable-vhook --enable-runtime-cpudetect --enable-gpl --enable-postproc --enable-swscale --enable-x11grab --enable-libdc1394 --enable-shared --disable-static
  libavutil     49.15. 0 / 49.15. 0
  libavcodec    52.20. 1 / 52.20. 1
  libavformat   52.31. 0 / 52.31. 0
  libavdevice   52. 1. 0 / 52. 1. 0
  libavfilter    0. 4. 0 /  0. 4. 0
  libswscale     0. 7. 1 /  0. 7. 1
  libpostproc   51. 2. 0 / 51. 2. 0
  built on Jan 24 2013 19:42:21, gcc: 4.4.3

Seems stream 0 codec frame rate differs from container frame rate: 480.00 (480/1) -> 0.08 (1/12)
Input #0, mov,mp4,m4a,3gp,3g2,mj2, from 'GOPR0090.MP4':
  Duration: 00:00:11.20, start: 0.000000, bitrate: 31333 kb/s
    Stream #0.0(eng): Video: h264, yuv420p, 848x480, 0.08 tbr, 240 tbn, 480 tbc
    Stream #0.1(eng): Audio: aac, 48000 Hz, stereo, s16
ffmpeg: unrecognized option '-vf'