[xkimal01@minerva2 virtualenv-13.0.1]$ java -jar MotifMaker-master/target/motif-maker-0.2.one-jar.jar find -f MotifMaker-master/src/test/resources/Geobact
er_metallireducens_gDNA.fasta
Exception in thread "main" java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at com.simontuffs.onejar.Boot.run(Boot.java:340)
        at com.simontuffs.onejar.Boot.main(Boot.java:166)
Caused by: com.beust.jcommander.ParameterException: The following options are required: -o, --output -g, --gff
        at com.beust.jcommander.JCommander.validateOptions(JCommander.java:314)
        at com.beust.jcommander.JCommander.parse(JCommander.java:276)
        at com.beust.jcommander.JCommander.parse(JCommander.java:258)
        at com.beust.jcommander.JCommander.parseValues(JCommander.java:764)
        at com.beust.jcommander.JCommander.parse(JCommander.java:275)
        at com.beust.jcommander.JCommander.parse(JCommander.java:258)
        at com.pacbio.basemods.Program$.main(Program.scala:915)
        at com.pacbio.basemods.Program.main(Program.scala)
        ... 6 more