API tools faq
paste
Advertisement
RoelShell

Untitled

RoelShell
Oct 28th, 2016
276
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 9.25 KB | None | 0 0
raw download clone embed print report
  1. > install.packages('rgdal', repos='http://cran.xl-mirror.nl/')
  2. Installing package into ‘/home/Roel/R/x86_64-redhat-linux-gnu-library/3.3’
  3. (as ‘lib’ is unspecified)
  4. trying URL 'http://cran.xl-mirror.nl/src/contrib/rgdal_1.1-10.tar.gz'
  5. Content type 'application/x-gzip' length 1653393 bytes (1.6 MB)
  6. ==================================================
  7. downloaded 1.6 MB
  8.  
  9. * installing *source* package ‘rgdal’ ...
  10. ** package ‘rgdal’ successfully unpacked and MD5 sums checked
  11. configure: CC: gcc -m64 -std=gnu99
  12. configure: CXX: g++ -m64
  13. configure: rgdal: 1.1-10
  14. checking for /usr/bin/svnversion... yes
  15. configure: svn revision: 622
  16. checking for gdal-config... /usr/local/bin/gdal-config
  17. checking gdal-config usability... yes
  18. configure: GDAL: 1.9.2
  19. checking GDAL version >= 1.6.3... yes
  20. checking for gcc... gcc -m64 -std=gnu99
  21. checking whether the C compiler works... yes
  22. checking for C compiler default output file name... a.out
  23. checking for suffix of executables...
  24. checking whether we are cross compiling... no
  25. checking for suffix of object files... o
  26. checking whether we are using the GNU C compiler... yes
  27. checking whether gcc -m64 -std=gnu99 accepts -g... yes
  28. checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed
  29. checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E
  30. checking for grep that handles long lines and -e... /bin/grep
  31. checking for egrep... /bin/grep -E
  32. checking for ANSI C header files... yes
  33. checking for sys/types.h... yes
  34. checking for sys/stat.h... yes
  35. checking for stdlib.h... yes
  36. checking for string.h... yes
  37. checking for memory.h... yes
  38. checking for strings.h... yes
  39. checking for inttypes.h... yes
  40. checking for stdint.h... yes
  41. checking for unistd.h... yes
  42. checking gdal.h usability... yes
  43. checking gdal.h presence... yes
  44. checking for gdal.h... yes
  45. checking gdal: linking with --libs only... yes
  46. checking GDAL: /usr/local/share/gdal/pcs.csv readable... yes
  47. checking proj_api.h usability... yes
  48. checking proj_api.h presence... yes
  49. checking for proj_api.h... yes
  50. checking for pj_init_plus in -lproj... yes
  51. ./proj_conf_test: error while loading shared libraries: libgdal.so.1: cannot open shared object file: No such file or directory
  52. ./configure: line 3669: test: -eq: unary operator expected
  53. ./configure: line 3674: test: -ge: unary operator expected
  54. ./configure: line 3700: test: -ge: unary operator expected
  55. configure: PROJ.4 version: < 4.8.0
  56. ./proj_conf_test: error while loading shared libraries: libgdal.so.1: cannot open shared object file: No such file or directory
  57. checking PROJ.4: epsg found and readable... yes
  58. ./configure: line 3775: test: -ge: unary operator expected
  59. ./proj_conf_test: error while loading shared libraries: libgdal.so.1: cannot open shared object file: No such file or directory
  60. checking PROJ.4: conus found and readable... yes
  61. configure: Package CPP flags: -I/usr/local/include
  62. configure: Package LIBS: -L/usr/local/lib -lgdal -lproj
  63. configure: creating ./config.status
  64. config.status: creating src/Makevars
  65. ** libs
  66. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c OGR_write.cpp -o OGR_write.o
  67. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c gdal-bindings.cpp -o gdal-bindings.o
  68. gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c init.c -o init.o
  69. gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c inverser.c -o inverser.o
  70. gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c local_stubs.c -o local_stubs.o
  71. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogr_geom.cpp -o ogr_geom.o
  72. ogr_geom.cpp: In function ‘SEXPREC* R_OGR_CAPI_features(SEXPREC*, SEXPREC*, SEXPREC*)’:
  73. ogr_geom.cpp:39: warning: ‘mp_count_k0’ may be used uninitialized in this function
  74. gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -c ogr_polygons.c -o ogr_polygons.o
  75. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogr_proj.cpp -o ogr_proj.o
  76. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogrdrivers.cpp -o ogrdrivers.o
  77. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ogrsource.cpp -o ogrsource.o
  78. ogrsource.cpp: In function ‘SEXPREC* ogrReadListColumn(OGRLayer*, SEXPREC*, int, int, int)’:
  79. ogrsource.cpp:603: warning: unused variable ‘DINT_MAX’
  80. ogrsource.cpp:604: warning: unused variable ‘DINT_MIN’
  81. g++ -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -I/usr/local/include -I"/usr/lib64/R/library/sp/include" -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c projectit.cpp -o projectit.o
  82. g++ -m64 -shared -L/usr/lib64/R/lib -o rgdal.so OGR_write.o gdal-bindings.o init.o inverser.o local_stubs.o ogr_geom.o ogr_polygons.o ogr_proj.o ogrdrivers.o ogrsource.o projectit.o -L/usr/local/lib -lgdal -lproj -L/usr/lib64/R/lib -lR
  83. installing to /home/Roel/R/x86_64-redhat-linux-gnu-library/3.3/rgdal/libs
  84. ** R
  85. ** data
  86. ** inst
  87. ** preparing package for lazy loading
  88. ** help
  89. *** installing help indices
  90. converting help for package ‘rgdal’
  91. finding HTML links ... done
  92. CRS-class html
  93. GDALDataset-class html
  94. GDALDriver-class html
  95. GDALMajorObject-class html
  96. GDALRasterBand-class html
  97. GDALReadOnlyDataset-class html
  98. GDALReadOnlyDataset-methods html
  99. GDALTransientDataset-class html
  100. GridsDatums html
  101. RGB2PCT html
  102. SGDF2PCT html
  103. SpatialGDAL-class html
  104. closeDataset-methods html
  105. displayDataset html
  106. llgrid html
  107. Rd warning: /tmp/RtmpNlZk4J/R.INSTALL769e25fa9f3f/rgdal/man/llgrid.Rd:11: missing file link ‘Spatial’
  108. Rd warning: /tmp/RtmpNlZk4J/R.INSTALL769e25fa9f3f/rgdal/man/llgrid.Rd:16: missing file link ‘gridat’
  109. Rd warning: /tmp/RtmpNlZk4J/R.INSTALL769e25fa9f3f/rgdal/man/llgrid.Rd:17: missing file link ‘gridat’
  110. make_EPSG html
  111. nor2k html
  112. projInfo html
  113. project html
  114. readGDAL html
  115. Rd warning: /tmp/RtmpNlZk4J/R.INSTALL769e25fa9f3f/rgdal/man/readGDAL.Rd:132: missing file link ‘flipVertical’
  116. readOGR html
  117. showWKT html
  118. spTransform-methods html
  119. wrappers html
  120. writeOGR html
  121. ** building package indices
  122. ** installing vignettes
  123. ** testing if installed package can be loaded
  124. Error in dyn.load(file, DLLpath = DLLpath, ...) :
  125. unable to load shared object '/home/Roel/R/x86_64-redhat-linux-gnu-library/3.3/rgdal/libs/rgdal.so':
  126. libgdal.so.1: cannot open shared object file: No such file or directory
  127. Error: loading failed
  128. Execution halted
  129. ERROR: loading failed
  130. * removing ‘/home/Roel/R/x86_64-redhat-linux-gnu-library/3.3/rgdal’
  131. Warning in install.packages :
  132. installation of package ‘rgdal’ had non-zero exit status
  133.  
  134. The downloaded source packages are in
  135. ‘/tmp/Rtmp3TPXKQ/downloaded_packages’
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!