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  1. [prometheus][plgant@p2286 job_0001]$ ll
  2. total 20
  3. lrwxrwxrwx 1 plgant plgrid 41 02-19 17:33 1drifi3.dat -> /net/people/plgant/c12rifispc/1drifi3.dat
  4. lrwxrwxrwx 1 plgant plgrid 37 02-19 17:33 Air.txt -> /net/people/plgant/c12rifispc/Air.txt
  5. lrwxrwxrwx 1 plgant plgrid 40 02-19 17:33 Lucite.txt -> /net/people/plgant/c12rifispc/Lucite.txt
  6. -rwxr-x--- 1 plgant plgrid 759 02-19 17:33 run.sh
  7. lrwxrwxrwx 1 plgant plgrid 39 02-19 17:33 Water.txt -> /net/people/plgant/c12rifispc/Water.txt
  8. [prometheus][plgant@p2286 job_0001]$ nano run.sh
  9. [prometheus][plgant@p2286 job_0001]$ ./run.sh
  10.  
  11. *** SHIELD-HIT12A-beta *** Copyright (c) 2016
  12. Institute of Nuclear Research RAS, Moscow, Russia and
  13. Dept. of Physics and Astronomy, Aarhus University, Aarhus, Denmark and
  14. Dept. of Experimental Clinical Oncology Aarhus University Hospital, Aarhus, Denmark.
  15.  
  16. SHIELD-HIT12A Version 0.4.0
  17. Build date: wto, 22 lis 2016, 20:43:53 CET
  18.  
  19. Working directory: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/
  20.  
  21. Parsing beam.dat...
  22. parsing completed.
  23.  
  24.  
  25. USEBMOD: Initializing beam modulator...
  26. /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/1drifi3.dat
  27. Found a 1-D beam modulator data set.
  28. Size of periodic structure: 0.1600 cm
  29. in 50 steps.
  30. Maximum thickness: 0.3000 cm
  31. Minimum thickness: 0.0600 cm
  32. Beam modulator is in MONTE CARLO mode.
  33. Beam modulator is attached to zone number: 3
  34. You should also check if beam modulator is applied
  35. at the correct z-position when struck by the first
  36. particle.
  37.  
  38. results 1D, all in cm:
  39. 1 3.2000000000000002E-003 5.9999999999999998E-002
  40. 2 6.4000000000000003E-003 6.1400000000000003E-002
  41. 3 9.5999999999999992E-003 7.3200000000000001E-002
  42. 4 1.2800000000000001E-002 8.4099999999999994E-002
  43. 5 1.6000000000000000E-002 9.4700000000000006E-002
  44. 6 1.9199999999999998E-002 0.10510000000000000
  45. 7 2.2400000000000000E-002 0.11480000000000000
  46. 8 2.5600000000000001E-002 0.12420000000000000
  47. 9 2.8799999999999999E-002 0.13339999999999999
  48. 10 3.2000000000000001E-002 0.14240000000000000
  49. 11 3.5200000000000002E-002 0.15100000000000000
  50. 12 3.8399999999999997E-002 0.15939999999999999
  51. 13 4.1599999999999998E-002 0.16789999999999999
  52. 14 4.4800000000000000E-002 0.17649999999999999
  53. 15 4.8000000000000001E-002 0.18479999999999999
  54. 16 5.1200000000000002E-002 0.19359999999999999
  55. 17 5.4399999999999997E-002 0.20250000000000001
  56. 18 5.7599999999999998E-002 0.21190000000000001
  57. 19 6.0800000000000000E-002 0.22180000000000000
  58. 20 6.4000000000000001E-002 0.23280000000000001
  59. 21 6.7199999999999996E-002 0.24520000000000000
  60. 22 7.0400000000000004E-002 0.26119999999999999
  61. 23 7.3599999999999999E-002 0.28649999999999998
  62. 24 7.6799999999999993E-002 0.29999999999999999
  63. 25 8.0000000000000002E-002 0.29999999999999999
  64. 26 8.3199999999999996E-002 0.29999999999999999
  65. 27 8.6400000000000005E-002 0.28639999999999999
  66. 28 8.9599999999999999E-002 0.26110000000000000
  67. 29 9.2799999999999994E-002 0.24510000000000001
  68. 30 9.6000000000000002E-002 0.23280000000000001
  69. 31 9.9199999999999997E-002 0.22180000000000000
  70. 32 0.10240000000000000 0.21190000000000001
  71. 33 0.10560000000000000 0.20250000000000001
  72. 34 0.10879999999999999 0.19359999999999999
  73. 35 0.11200000000000000 0.18479999999999999
  74. 36 0.11520000000000000 0.17640000000000000
  75. 37 0.11840000000000001 0.16789999999999999
  76. 38 0.12160000000000000 0.15939999999999999
  77. 39 0.12479999999999999 0.15090000000000001
  78. 40 0.12800000000000000 0.14230000000000001
  79. 41 0.13120000000000001 0.13339999999999999
  80. 42 0.13439999999999999 0.12420000000000000
  81. 43 0.13760000000000000 0.11470000000000000
  82. 44 0.14080000000000001 0.10500000000000000
  83. 45 0.14399999999999999 9.4700000000000006E-002
  84. 46 0.14720000000000000 8.4000000000000005E-002
  85. 47 0.15040000000000001 7.3200000000000001E-002
  86. 48 0.15359999999999999 6.1400000000000003E-002
  87. 49 0.15679999999999999 5.9999999999999998E-002
  88. 50 0.16000000000000000 5.9999999999999998E-002
  89.  
  90. Initializing geometry...
  91. initialization has completed successfully.
  92.  
  93. Parsing mat.dat...
  94. parsing completed.
  95.  
  96. Setting up stopping power tables...
  97. Calculation of dE/dX(E), R(E) and Opt(E) for all NUMMED= 3 media according to Modified Bethe-Bloch and Lindhard-Scharff formulas.
  98. Calculating for particle JPART= 2 ...
  99. Calculating for particle JPART= 3 ...
  100. Calculating for particle JPART= 4 ...
  101. Calculating for particle JPART= 7 ...
  102. Calculating for particle JPART= 8 ...
  103. Calculating for particle JPART= 9 ...
  104. Calculating for particle JPART= 15 ...
  105. Calculating for particle JPART= 16 ...
  106. Calculating for particle JPART= 21 ...
  107. Calculating for particle JPART= 22 ...
  108. Calculating for particle JPART= 23 ...
  109. Calculating for particle JPART= 24 ...
  110. Calculating for ion H 1 ...
  111. Calculating for ion He 4 ...
  112. Calculating for ion Li 7 ...
  113. Calculating for ion Be 9 ...
  114. Calculating for ion B 11 ...
  115. Calculating for ion C 12 ...
  116. Calculating for ion N 14 ...
  117. Calculating for ion O 16 ...
  118. Calculating for ion F 19 ...
  119. Calculating for ion Ne 20 ...
  120. Calculating for ion Na 23 ...
  121. Calculating for ion Mg 24 ...
  122. Calculating for ion Al 27 ...
  123. Calculating for ion Si 28 ...
  124. Calculating for ion P 31 ...
  125. Calculating for ion S 32 ...
  126. Calculating for ion Cl 35 ...
  127. Calculating for ion Ar 40 ...
  128. Calculating for ion K 39 ...
  129. Calculating for ion Ca 40 ...
  130. Calculation of dE/dX(E) completed.
  131.  
  132. Looking for external replacement stopping power tables...
  133. MEDIUM No. 1, ICRU ID=276
  134. The file /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/Water.txt
  135. for media no. 1, ID=276, was successfully read.
  136.  
  137. Interpolating for Ion H 1 ...
  138. Interpolating for Ion He 4 ...
  139. Interpolating for Ion Li 7 ...
  140. Interpolating for Ion Be 9 ...
  141. Interpolating for Ion B 11 ...
  142. Interpolating for Ion C 12 ...
  143. Interpolating for Ion N 14 ...
  144. Interpolating for Ion O 16 ...
  145. Interpolating for Ion F 19 ...
  146. Interpolating for Ion Ne 20 ...
  147. Interpolating for Ion Na 23 ...
  148. Interpolating for Ion Mg 24 ...
  149. Interpolating for Ion Al 27 ...
  150. Interpolating for Ion Si 28 ...
  151. Interpolating for Ion P 31 ...
  152. Interpolating for Ion S 32 ...
  153. Interpolating for Ion Cl 35 ...
  154. Interpolating for Ion Ar 40 ...
  155. MEDIUM No. 2, ICRU ID=104
  156. The file /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/Air.txt
  157. for media no. 2, ID=104, was successfully read.
  158.  
  159. Interpolating for Ion H 1 ...
  160. Interpolating for Ion He 4 ...
  161. Interpolating for Ion Li 7 ...
  162. Interpolating for Ion Be 9 ...
  163. Interpolating for Ion B 11 ...
  164. Interpolating for Ion C 12 ...
  165. Interpolating for Ion N 14 ...
  166. Interpolating for Ion O 16 ...
  167. Interpolating for Ion F 19 ...
  168. Interpolating for Ion Ne 20 ...
  169. Interpolating for Ion Na 23 ...
  170. Interpolating for Ion Mg 24 ...
  171. Interpolating for Ion Al 27 ...
  172. Interpolating for Ion Si 28 ...
  173. Interpolating for Ion P 31 ...
  174. Interpolating for Ion S 32 ...
  175. Interpolating for Ion Cl 35 ...
  176. Interpolating for Ion Ar 40 ...
  177. MEDIUM No. 3, ICRU ID=223
  178. The file /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/Lucite.txt
  179. for media no. 3, ID=223, was successfully read.
  180.  
  181. Interpolating for Ion H 1 ...
  182. Interpolating for Ion He 4 ...
  183. Interpolating for Ion Li 7 ...
  184. Interpolating for Ion Be 9 ...
  185. Interpolating for Ion B 11 ...
  186. Interpolating for Ion C 12 ...
  187. Interpolating for Ion N 14 ...
  188. Interpolating for Ion O 16 ...
  189. Interpolating for Ion F 19 ...
  190. Interpolating for Ion Ne 20 ...
  191. Interpolating for Ion Na 23 ...
  192. Interpolating for Ion Mg 24 ...
  193. Interpolating for Ion Al 27 ...
  194. Interpolating for Ion Si 28 ...
  195. Interpolating for Ion P 31 ...
  196. Interpolating for Ion S 32 ...
  197. Interpolating for Ion Cl 35 ...
  198. Interpolating for Ion Ar 40 ...
  199.  
  200. Initializing detectors from detect.dat...
  201. Detector output filename: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/400CrD0001.bdo
  202. Detector output filename: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/400CrD10001.bdo
  203. Detector output filename: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/400Cr.spc0001.spc
  204. Number of detectors initialized : 10 (including internal auxilliary detectors)
  205. Placeholders needed : 154000
  206. Memory to be allocated for scoring: 2464000 bytes
  207. initialization successfully completed.
  208.  
  209.  
  210. Starting transport engine...
  211. Particle number overridden to 1000
  212. Primary particle no. 1
  213. Primary particle no. 1 ETR: 0 hours 0 minutes 0 seconds
  214. Beam modulator was applied at z = -1.3000000000000000 cm
  215. Primary particle no. 2 ETR: 0 hours 0 minutes 0 seconds
  216. Primary particle no. 3 ETR: 0 hours 0 minutes 0 seconds
  217. Primary particle no. 4 ETR: 0 hours 0 minutes 0 seconds
  218. Primary particle no. 5 ETR: 0 hours 0 minutes 0 seconds
  219. Primary particle no. 6 ETR: 0 hours 0 minutes 0 seconds
  220. Primary particle no. 7 ETR: 0 hours 0 minutes 0 seconds
  221. Primary particle no. 8 ETR: 0 hours 0 minutes 0 seconds
  222. Primary particle no. 9 ETR: 0 hours 0 minutes 0 seconds
  223. Primary particle no. 10 ETR: 0 hours 0 minutes 0 seconds
  224.  
  225. [...]
  226.  
  227. Primary particle no. 999 ETR: 0 hours 0 minutes 0 seconds
  228. Primary particle no. 1000 ETR: 0 hours 0 minutes 0 seconds
  229. Saving detector file: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/400CrD0001.bdo
  230. Saving detector file: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/400CrD10001.bdo
  231. Saving SPC file: /net/people/plgant/c12rifispc/run_20170219_173334/workspace/job_0001/400Cr.spc0001.spc
  232.  
  233. Transport completed.
  234. Run time: 0 hours 0 minutes 47 seconds
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