[xkimal01@minerva2 virtualenv-13.0.1]$ java -jar MotifMaker-master/target/motif-maker-0.2.one-jar.jar find -f /hpc/users/fangg03/fangg03anew/zImportant/data_for_motif_discovery/HP_J99_HGAP2.fasta -g /hpc/users/xkimal01/virtualenv-13.0.1/MotifMaker-master/myfiles/modifications.gff.gz -o /hpc/users/xkimal01/virtualenv-13.0.1/MotifMaker-master/myfiles/motifs.csv
Exception in thread "main" java.lang.reflect.InvocationTargetException
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:616)
        at com.simontuffs.onejar.Boot.run(Boot.java:340)
        at com.simontuffs.onejar.Boot.main(Boot.java:166)
Caused by: java.io.FileNotFoundException: /hpc/users/xkimal01/virtualenv-13.0.1/MotifMaker-master/myfiles/modifications.gff.gz (No such file or directory)
        at java.io.FileInputStream.open(Native Method)
        at java.io.FileInputStream.<init>(FileInputStream.java:137)
        at java.io.FileInputStream.<init>(FileInputStream.java:96)
        at com.pacbio.basemods.Reader$.read(MotifMixture.scala:184)
        at com.pacbio.basemods.Reader$.loadModificationsFromGff(MotifMixture.scala:291)
        at com.pacbio.basemods.Program$.loadModificationsGff(Program.scala:602)
        at com.pacbio.basemods.Program$.runMotifReport(Program.scala:796)
        at com.pacbio.basemods.Program$.main(Program.scala:929)
        at com.pacbio.basemods.Program.main(Program.scala)
        ... 6 more