mbmcgarry@dyn-72-33-204-16 ~/git/cycamore (ef_behavior) $ ./install.py
-- The C compiler identification is AppleClang 6.0.0.6000056
-- The CXX compiler identification is AppleClang 6.0.0.6000056
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done

CMAKE_MODULE_PATH /share/cmake-2.8/Modules;/Users/mbmcgarry/git/cycamore/cmake
-- Using /Users/mbmcgarry/.local as CYCLUS_ROOT_DIR.
-- Found Cyclus Core Headers : /Users/mbmcgarry/.local/include/cyclus
-- Found Cyclus Core Test Headers : /Users/mbmcgarry/.local/include/cyclus
-- Found Cyclus Core Shared Data : /Users/mbmcgarry/.local/share/cyclus
-- Found Cyclus Core Library : /Users/mbmcgarry/.local/lib/libcyclus.dylib
-- Found Cyclus Test Libraries : /Users/mbmcgarry/.local/lib/libgtest.dylib/Users/mbmcgarry/.local/lib/cyclus/libbaseagentunittests.dylib
-- Found LibXml2: /opt/local/lib/libxml2.dylib (found version "2.9.2")
-- checking for module 'glib-2.0'
--   found glib-2.0, version 2.42.1
-- Found glib-2.0: /opt/local/include/glib-2.0, /opt/local/lib/libglib-2.0.dylib
-- Found PkgConfig: /opt/local/bin/pkg-config (found version "0.28")
-- checking for module 'sigc++-2.0'
--   found sigc++-2.0, version 2.4.0
-- Found SigC++
-- checking for module 'glibmm-2.4'
--   found glibmm-2.4, version 2.42.0
-- Found Glibmm
-- checking for module 'libxml++-2.6'
--   found libxml++-2.6, version 2.36.0
-- Found LibXML++
--LIBS: /Users/mbmcgarry/.local/lib/libcyclus.dylib;/opt/local/lib/libxml++-2.6.dylib;/opt/local/lib/libxml2.dylib;/opt/local/lib/libglibmm-2.4.dylib;/opt/local/lib/libglib-2.0.dylib;/opt/local/lib/libsigc-2.0.dylib
--LD_LIBRARY_PATH:
-- Boost version: 1.57.0
-- Found the following Boost libraries:
--   filesystem
--   system
-- Looking for dgemm_
-- Looking for dgemm_ - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
	Found LAPACK Libraries: /System/Library/Frameworks/Accelerate.framework;/System/Library/Frameworks/Accelerate.framework
-- Found HDF5: /opt/local/lib/libhdf5_hl.dylib;/opt/local/lib/libhdf5.dylib;/opt/local/lib/libz.dylib;/usr/lib/libdl.dylib;/usr/lib/libm.dylib
	COIN Root Dir:
-- COIN_ROOT_DIR hint is :
-- Coin multiple library dependency status:
	COIN Include Dir: /opt/local/include/coin
	COIN CBC: /opt/local/lib/libCbc.dylib
	COIN CBC solver: /opt/local/lib/libCbcSolver.dylib
	COIN CGL: /opt/local/lib/libCgl.dylib
	COIN CLP: /opt/local/lib/libClp.dylib
	COIN UTILS: /opt/local/lib/libCoinUtils.dylib
	COIN OSI: /opt/local/lib/libOsi.dylib
	COIN OSI CLP: /opt/local/lib/libOsiClp.dylib
	COIN ZLIB: /opt/local/lib/libz.dylib
	COIN BZ2: /opt/local/lib/libbz2.dylib
-- Found COIN: /opt/local/include/coin
-- Found COIN Include Dirs: /opt/local/include/coin
CMake Error at src/CMakeLists.txt:3 (include_directories):
  include_directories given empty-string as include directory.


-- Starting construction of build files for agent: batch_reactor
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/batch_reactor.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/batch_reactor.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/batch_reactor.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/batch_reactor.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/batch_reactor_tests.h to /Users/mbmcgarry/git/cycamore/build/cycamore/batch_reactor_tests.h.
-- Copying /Users/mbmcgarry/git/cycamore/src/batch_reactor_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/batch_reactor_tests.cc.
-- Finished construction of build files for agent: batch_reactor
-- Starting construction of build files for agent: enrichment_facility
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/enrichment_facility.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/enrichment_facility.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
In file included from /Users/mbmcgarry/git/cycamore/src/enrichment_facility.cc:3:
/Users/mbmcgarry/git/cycamore/src/behavior_functions.h:1:9: warning:
      'CYCAMORE_SRC_BEHAVIOR_FUNCTIONS_H_' is used as a header guard here,
      followed by #define of a different macro [-Wheader-guard]
#ifndef CYCAMORE_SRC_BEHAVIOR_FUNCTIONS_H_
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Users/mbmcgarry/git/cycamore/src/behavior_functions.h:2:9: note:
      'CYCAMORE_SRC_BEHAVIOR_FUNCITONS_H_' is defined here; did you mean
      'CYCAMORE_SRC_BEHAVIOR_FUNCTIONS_H_'?
#define CYCAMORE_SRC_BEHAVIOR_FUNCITONS_H_
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        CYCAMORE_SRC_BEHAVIOR_FUNCTIONS_H_
1 warning generated.
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/enrichment_facility.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/enrichment_facility.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/enrichment_facility_tests.h to /Users/mbmcgarry/git/cycamore/build/cycamore/enrichment_facility_tests.h.
-- Copying /Users/mbmcgarry/git/cycamore/src/enrichment_facility_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/enrichment_facility_tests.cc.
-- Finished construction of build files for agent: enrichment_facility
-- Starting construction of build files for agent: sink
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/sink.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/sink.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/sink.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/sink.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/sink_tests.h to /Users/mbmcgarry/git/cycamore/build/cycamore/sink_tests.h.
-- Copying /Users/mbmcgarry/git/cycamore/src/sink_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/sink_tests.cc.
-- Finished construction of build files for agent: sink
-- Starting construction of build files for agent: source
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/source.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/source.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/source.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/source.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/source_tests.h to /Users/mbmcgarry/git/cycamore/build/cycamore/source_tests.h.
-- Copying /Users/mbmcgarry/git/cycamore/src/source_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/source_tests.cc.
-- Finished construction of build files for agent: source
-- Starting construction of build files for agent: deploy_inst
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/deploy_inst.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/deploy_inst.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/deploy_inst.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/deploy_inst.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/deploy_inst_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/deploy_inst_tests.cc.
-- Finished construction of build files for agent: deploy_inst
-- Starting construction of build files for agent: manager_inst
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/manager_inst.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/manager_inst.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/manager_inst.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/manager_inst.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/manager_inst_tests.h to /Users/mbmcgarry/git/cycamore/build/cycamore/manager_inst_tests.h.
-- Copying /Users/mbmcgarry/git/cycamore/src/manager_inst_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/manager_inst_tests.cc.
-- Finished construction of build files for agent: manager_inst
-- Starting construction of build files for agent: growth_region
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/growth_region.cc --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/growth_region.cc --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Executing /Users/mbmcgarry/.local/include/cyclus/../../bin/cycpp.py /Users/mbmcgarry/git/cycamore/src/growth_region.h --cpp-path=clang++ -o=/Users/mbmcgarry/git/cycamore/build/cycamore/growth_region.h --pass3-use-orig -I=:/Users/mbmcgarry/.local/include/cyclus:/opt/local/include/libxml++-2.6:/opt/local/include/glibmm-2.4:/opt/local/lib/glibmm-2.4/include:/opt/local/include/glib-2.0:/opt/local/lib/glib-2.0/include:/opt/local/include/sigc++-2.0:/opt/local/lib/sigc++-2.0/include:/opt/local/lib/libxml++-2.6/include:/opt/local/include:/Users/mbmcgarry/git/cycamore/tests:/Users/mbmcgarry/.local/include/cyclus/..:/opt/local/include/coin
-- Copying /Users/mbmcgarry/git/cycamore/src/growth_region_tests.h to /Users/mbmcgarry/git/cycamore/build/cycamore/growth_region_tests.h.
-- Copying /Users/mbmcgarry/git/cycamore/src/growth_region_tests.cc to /Users/mbmcgarry/git/cycamore/build/cycamore/growth_region_tests.cc.
-- Finished construction of build files for agent: growth_region
GENERATED TESTS DIR /Users/mbmcgarry/git/cycamore/build/tests
GENERATED TESTS
CYClUS EXECUTABLE PATH = /Users/mbmcgarry/.local/include/cyclus/../../bin
-- Found Doxygen: /Applications/Doxygen.app/Contents/Resources/doxygen (found version "1.8.9")
-- Configuring incomplete, errors occurred!
See also "/Users/mbmcgarry/git/cycamore/build/CMakeFiles/CMakeOutput.log".
Traceback (most recent call last):
  File "./install.py", line 129, in <module>
    main()
  File "./install.py", line 126, in main
    install_cycamore(args)
  File "./install.py", line 54, in install_cycamore
    rtn = subprocess.check_call(cmake_cmd, cwd=absexpanduser(args.build_dir), shell=(os.name=='nt'))
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 540, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['cmake', '/Users/mbmcgarry/git/cycamore', '-DCMAKE_INSTALL_PREFIX=/Users/mbmcgarry/.local', '-DCYCLUS_ROOT_DIR=/Users/mbmcgarry/.local']' returned non-zero exit status 1
mbmcgarry@dyn-72-33-204-16 ~/git/cycamore (ef_behavior) $