API tools faq
paste
Advertisement
Guest User

Untitled

a guest
Feb 3rd, 2017
173
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
SPARQL 10.36 KB | None | 0 0
raw download clone embed print report
  1. @PREFIX dc: <http://purl.org/dc/elements/1.1/#> .
  2. @PREFIX rdf: <http://www.w3.org/2000/01/rdf-schema#> .
  3. @PREFIX odrl: <http://www.w3.org/ns/odrl/2/> .
  4. @PREFIX dct: <http://purl.org/dc/terms/> .
  5. @PREFIX rev: <http://purl.org/stuff/rev#> .
  6. @PREFIX owl: <http://www.w3.org/2002/07/owl#> .
  7. @PREFIX pub: <http://www.ncbi.nlm.nih.gov/pubmed/> .
  8. @PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
  9. @PREFIX pps: <https://www.envipath.org/vocabulary#> .
  10.  
  11. ###### PPSObject
  12. pps:object  a                   rdfs:Class ;
  13.             pps:name            rdfs:Literal ;
  14.             pps:objectId        rdfs:Literal ; #Identifier
  15.             pps:alias           rdfs:Literal ;
  16.             pps:lastModified    rdfs:Literal ; #Timestamp
  17.             pps:lastModifierBy  pps:user ;
  18.             pps:creator         pps:user ;
  19.             pps:creationDate    rdfs:Literal ; #Timestamp
  20.             pps:modification    pps:mod .
  21.  
  22. ####### Modification
  23. pps:mod     a               rdfs:Class ;
  24.             pps:modifiedBy  pps:user ;
  25.             pps:modified    rdfs:Literal . #Timestamp
  26.  
  27.  
  28. ####### Reviewable PPSObject
  29. pps:reviewableObject    rdfs:SubClassOf     pps:object ;
  30.                         pps:reviewStatus    rdfs:Literal ;
  31.                         pps:reviewedBy      pps:user ;
  32.                         pps:scenario        pps:scenarios ;
  33.                         pps:alias           rdfs:Literal .
  34.  
  35. # RevieablePPSObjects: bags
  36. pps:scenarios               a               rdf:bag ;
  37.                             pps:hasMember   pps:scenario .
  38.  
  39.  
  40.  
  41. ###### User
  42. pps:user    rdfs:SubClassOf     pps:object ;
  43.             pps:activationKey   rdfs:Literal ;
  44.             pps:activiationStatus rdfs:Literal ;
  45.             pps:defaultPackage  pps:package ;
  46.             pps:defaultGroup    pps:GROUP ;
  47.             pps:profile         pps:profile ;
  48.             pps:currentSettings pps:setting ;
  49.             pps:affiliation     pps:affiliation ;
  50.             pps:surname         rdfs:Literal ;
  51.             pps:forename        rdfs:Literal .
  52.  
  53. ## User: profile
  54. pps:profile     rdfs:SubClassOf     pps:object ;
  55.                 pps:seeAlso         rdfs:Literal ;
  56.                 pps:email           rdfs:Literal ;
  57.                 pps:publicProfile   rdfs:Literal . # Bool
  58.  
  59. ## User: affiliation
  60. pps:affiliation     rdfs:SubClassOf     pps:object ;
  61.                     pps:workplace       rdfs:Literal ;
  62.                     pps:city            rdfs:Literal ;
  63.                     pps:country         rdfs:Literal .
  64.  
  65. ###### Package
  66. pps:package rdfs:SubClass       pps:object ;
  67.             pps:defaultPackage  rdfs:Literal ;
  68.             pps:packageOwner    pps:user ;
  69.             pps:packageGroup    pps:GROUP ;
  70.             pps:reviewComment   rdfs:Literal ;
  71.             pps:compound        pps:compounds ;
  72.             pps:reaction        pps:reactions ;
  73.             pps:scenario        pps:scenarios ;
  74.             pps:pathway         pps:pathways ;
  75.             pps:rule            pps:rules ;
  76.             pps:rr              pps:rrs ;
  77.             pps:writer          pps:writers ;
  78.             pps:reader          pps:readers ;
  79.             pps:enzyme          pps:enzyme ;
  80.  
  81. ## Package: bags
  82. pps:compounds   a               rdf:bag ;
  83.                 dc:hasMember    pps:compound .
  84. pps:reactions   a               rdf:bag ;
  85.                 dc:hasMember    pps:reaction .
  86. pps:scenarios   a               rdf:bag ;
  87.                 dc:hasMember    pps:scenario .
  88. pps:pathways    a               rdf:bag ;
  89.                 dc:hasMember    pps:pathway .
  90. pps:rules       a               rdf:bag ;
  91.                 dc:hasMember    pps:rule .
  92. pps:rrs         a               rdf:bag ;
  93.                 dc:hasMember    pps:rr .
  94. pps:writers     a               rdf:bag ;
  95.                 dc:hasMember    pps:user .
  96. pps:readers     a               rdf:bag ;
  97.                 dc:hasMember    pps:user .
  98.  
  99.  
  100. ###### Group
  101. pps:GROUP   rdfs:SubClassOf     pps:object ;
  102.             pps:groupOwner      pps:user ;
  103.             pps:groupPackage    pps:package ;
  104.             pps:writer          pps:writers ;
  105.             pps:reader          pps:readers ;
  106.             pps:groupMember     pps:groupMemberBag ;
  107.             pps:description     rdfs:Literal .
  108.  
  109.  
  110. # Group: bags
  111. pps:groupMemberBag  a               rdf:bag
  112.                     dc:hasMember    pps:groupMember .
  113.  
  114. # GroupMember
  115. pps:groupMember     rdfs:SubClassOf     pps:user ;
  116.                    
  117.  
  118. ###### Compound
  119. pps:compound    rdfs:SubClassOf                 pps:reviewableObject ;
  120.                 pps:normalizedStructure         pps:compoundStructure ;
  121.                 pps:defaultCompoundStructure    pps:compoundStructure ;
  122.                 pps:compoundStructure           pps:compoundStructures .
  123.  
  124. # Compound: bags
  125. pps:compoundStructures      a               rdf:bag ;
  126.                             dc:hasMember    pps:compoundStructure .
  127.  
  128.  
  129. ###### CompoundStructure
  130. pps:compoundStructure   pps:smiles              rdfs:Literal ;
  131.                         pps:imageSize           rdfs:Literal ;
  132.                         pps:compoundHalflife    pps:halfLife .
  133.  
  134.  
  135. # Halflife -> No PPSObject anymore since the last updates
  136. ###pps:halfLife         rdfs:
  137.  
  138. # Reaction
  139. pps:reaction    rdfs:SubClassOf     pps:reviewableObject ;
  140.                 pps:rule            pps:rule ;
  141.                 pps:reactionSmirks  pps:smirks ;
  142.                 pps:multiStep       rdfs:Literal ;
  143.                 pps:reactionEduct   pps:reactionEducts ;
  144.                 pps:reactionProduct pps:reactionProducts .
  145.  
  146. # Reaction: bags
  147. pps:reactionEducts      a               rdf:bag ;
  148.                         dc:hasMember    pps:reactionConnector .
  149. pps:reactionProducts    a               rdf:bag ;
  150.                         dc:hasMember    pps:reactionConnector .
  151. pps:reactionConnector   pps:educt       pps:compoundStructure ;
  152.                         pps:product     pps:compoundStructure .
  153.  
  154. ###### Scenario
  155. pps:Scenario    rdfs:SubClassOf     pps:reviewableObject ;
  156.                 pps:scenStudyDate   rdfs:Literal ; # Date
  157.                 pps:addInfColl      pps:addInfColl ;
  158.                 pps:halfLife        pps:halfLifes ; # Map -> (CS, HL) Change to AdditionalInformation
  159.                 pps:scenType        rdfs:Literal ;
  160.                 pps:plainName       rdfs:Literal .
  161.  
  162. pps:halfLifes   a               rdf:bag ;
  163.                 pps:hasMember   pps:halflife . # How about that? Halflifes are no PPSObjects anymore
  164.  
  165.  
  166. ###### AddInfCol
  167. pps:addInfColl  rdfs:SubClassOf     pps:object ;
  168.                 pps:addInf          pps:addInfBag .
  169.  
  170. pps:addInfBag   a               rdf:bag ;
  171.                 dc:hasMember    pps:additionalInformation .
  172.  
  173. ###### AdditionalInformation
  174. pps:additionalInformation   rdfs:SubClassOf     pps:object ;
  175.                             pps:infoData        rdfs:Literal ;
  176.                             pps:infoType        rdfs:Literal .
  177.  
  178. ###### Relative-reasoning
  179. pps:rr      rdfs:SubClassOf     pps:reviewableObject ;
  180.             pps:modelType       rdfs:Literal ;
  181.             pps:modelFilter     rdfs:Literal ;
  182.             pps:modelStatus     rdfs:Literal ;
  183.             pps:cutoff          rdfs:Literal ;
  184.             pps:c-cut           rdfs:Literal ;
  185.             pps:fpType          rdfs:Literal ;
  186.             pps:clfType         rdfs:Literal ;
  187.             pps:usesPackage     pps:packages ;
  188.             pps:NUM_INSTANCES   rdfs:Literal ;
  189.             PPS:NUM_LABELS      rdfs:Literal ;
  190.             pps:inst-pred-i     rdfs:Literal ; # 0 <= i < NUM_INSTANCES
  191.             pps:inst-actual-i   rdfs:Literal . # 0 <= i < NUM_INSTANCES
  192.  
  193.  
  194. ## RR: bags
  195. pps:packages    a               rdf:bag ;
  196.                 dc:hasMember    pps:package .
  197.  
  198.  
  199. ###### Pathway
  200. pps:pathway     rdfs:SubClassOf     pps:reviewableObject ;
  201.                 pps:pathwayNode     pps:nodes ;
  202.                 pps:completed       rdfs:Literal ;
  203.                 pps:pathwaySetting  pps:setting ;
  204.                 pps:pathwayEdge     pps:edges .
  205.  
  206. ## Pathway: bags
  207. pps:nodes   a               rdf:bag ;
  208.             dc:hasMember    pps:node .
  209. pps:edges   a               rdf:bag ;
  210.             dc:hasMember    pps:edge .
  211.  
  212.  
  213. ###### Rule
  214. pps:rule    rdfs:SubClassOf                 pps:reviewableObject ;
  215.             pps:ruleIsSuperRule             rdfs:Literal ; # Bool
  216.             pps:smirks                      rdfs:Literal ;
  217.             pps:immediateRule               rdfs:Literal ; # Bool
  218.             pps:includedInSuperRule         rdfs:Literal ; # Bool
  219.             pps:ruleReactantFilterSmarts    rdfs:Literal ;
  220.             pps:ruleProductFilterSmarts     rdfs:Literal ;
  221.             pps:subRule                     pps:rule .
  222.  
  223.  
  224. ###### Node
  225. pps:node    rdfs:SubClassOf     pps:reviewableObject ;
  226.             pps:nodeDepth       rdfs:Literal ;
  227.             pps:nodeLabel       rdfs:Literal ;
  228.             pps:pathway         pps:pathway .
  229.  
  230. ###### Edge
  231. pps:edge    rdfs:SubClassOf     pps:reviewableObject ;
  232.             pps:pathway         pps:pathway ;
  233.             pps:edgeReaction    pps:reaction ;
  234.             pps:edgeReason      rdfs:Literal ;
  235.             pps:edgeEduct       pps:educts ;
  236.             pps:edgeProduct     pps:products .
  237. ## Edge: bags
  238. pps:educts      a               rdf:bag ;
  239.                 dc:hasMember    pps:node .
  240. pps:products    a               rdf:bag ;
  241.                 dc:hasMember    pps:node .
  242.  
  243.  
  244.  
  245. ### Additional Information Subclasses:
  246. pps:AmmoniaUptakeRateAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  247. pps:BioMassAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  248. pps:BioreactorAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  249. pps:BulkDensityAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  250. pps:CECAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  251. pps:ConfidenceLevelAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  252. pps:EnzymeAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  253. pps:FinalCompoundConcentrationAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  254. pps:HalfLifeAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  255. pps:HumidityAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  256. pps:InoculumSourceAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  257. pps:InstantiatingOrganismAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  258. pps:MinorMajorAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  259. pps:ModelPredictionProbability  rdfs:SubClassOf  pps:additionalInformation .
  260. pps:NutrientsAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  261. pps:OMContentAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  262. pps:OrganismAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  263. pps:OriginalSludgeAmountAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  264. pps:OxygenUptakeRateAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  265. pps:ParametersMeasuredAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  266. pps:ProposedIntermediateAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  267. pps:RedoxAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  268. pps:ReferenceAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  269. pps:ReferringScenarioAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  270. pps:RuleLikelihood  rdfs:SubClassOf  pps:additionalInformation .
  271. pps:SludgeRetentionTimeAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  272. pps:SoilClassificationSystemAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  273. pps:SoilSourceAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  274. pps:SoilTexture1AdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  275. pps:SoilTexture2AdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  276. pps:SolventForCompoundSolutionAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  277. pps:SourceOfLiquidMatrixAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
  278. pps:SpikeCompoundAdditionalInformation  rdfs:SubClassOf  pps:additionalInformation .
  279. pps:SpikeConcentrationAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  280. pps:TemperatureAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  281. pps:TPAAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  282. pps:TSSAdditionInformation  rdfs:SubClassOf  pps:additionalInformation .
  283. pps:TypeOfAdditionAdditionalInformation rdfs:SubClassOf  pps:additionalInformation .
  284. pps:VolatileTSSAdditionalInformation    rdfs:SubClassOf  pps:additionalInformation .
  285. pps:WaterStorageCapacityAdditionalInformation   rdfs:SubClassOf  pps:additionalInformation .
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!