umar@umar:~/projects/svnprojs/msrepo/trunk$ rake features:plain --trace
(in /home/umar/projects/svnprojs/msrepo/trunk)
** Invoke features:plain (first_time)
** Execute features:plain
bundle exec /home/umar/.rvm/rubies/ruby-1.8.7-p330/bin/ruby -I "/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/cucumber-0.10.2/lib:lib" "/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/cucumber-0.10.2/bin/cucumber"  --profile default
Using the default profile...
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rails-2.3.4/lib/rails/gem_dependency.rb:119:Warning: Gem::Dependency#version_requirements is deprecated and will be removed on or after August 2010.  Use #requirement
/home/umar/projects/svnprojs/msrepo/trunk/config/initializers/delayed_job_config.rb:10: warning: already initialized constant MAX_ATTEMPTS
/home/umar/projects/svnprojs/msrepo/trunk/app/models/import_session_log.rb:9: warning: already initialized constant STATUSES
Processing /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/demo/mascot_files/F004033.dat
Importing mascot dat files: integrated mascot dat file in 0.052875 sec.
Importing mascot dat files: connected hits in 1.081753 sec.
Saved mascot dat file 862179975.
Imported mascot dat file: 4.058809 sec.
Imported GPS data: 76.863881 sec.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/data_root/digesters/digester1/Win2000cmt_ 2009-04-01 0934 short.xml
  updated wells for primary microtiter plate 1811504200007535 in 0.002086 sec.
  updated wells for primary microtiter plate 1811504200009302 in 0.073874 sec.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/data_root/digesters/digester1/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.108903 sec.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/data_root/digesters/digester1/HP-31755206541_short.xml
  updated wells for primary microtiter plate 1811504200000815 in 0.003844 sec.
  updated wells for primary microtiter plate 1811504200000841 in 0.005177 sec.
  updated wells for primary microtiter plate 1811504200000842 in 0.003972 sec.
  updated wells for primary microtiter plate 1811504200000844 in 0.005167 sec.
  updated wells for primary microtiter plate 1811504200000846 in 0.004124 sec.
  updated wells for primary microtiter plate 1811504200000847 in 0.004493 sec.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/data_root/digesters/digester1/Win2000cmt_ 2009-04-01 0934 short.xml
  updated wells for primary microtiter plate 1811504200007535 in 0.003224 sec.
  updated wells for primary microtiter plate 1811504200009302 in 0.076561 sec.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/data_root/digesters/digester1/HP-31755206541_short.xml
  updated wells for primary microtiter plate 1811504200000815 in 0.002543 sec.
  updated wells for primary microtiter plate 1811504200000841 in 0.002039 sec.
  updated wells for primary microtiter plate 1811504200000842 in 0.001978 sec.
  updated wells for primary microtiter plate 1811504200000844 in 0.002012 sec.
  updated wells for primary microtiter plate 1811504200000846 in 0.00222 sec.
  updated wells for primary microtiter plate 1811504200000847 in 0.002455 sec.
Importing mascot dat files: integrated mascot dat file in 0.012433 sec.
Importing mascot dat files: connected hits in 1.226824 sec.
Saved mascot dat file 862180071.
Importing mascot dat files: integrated mascot dat file in 0.0127 sec.
Importing mascot dat files: connected hits in 1.109499 sec.
Saved mascot dat file 862180072.
Importing mascot dat files: integrated mascot dat file in 0.014905 sec.
Importing mascot dat files: connected hits in 0.080812 sec.
Saved mascot dat file 862180073.
Importing mascot dat files: integrated mascot dat file in 0.015086 sec.
Importing mascot dat files: connected hits in 0.083004 sec.
Saved mascot dat file 862180074.
Cannot find sequence database SwissProt_R56.11 from server agvoe-mascot: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/demo/mascot_files/yml_examples/F040291_broken.dat.yml
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.057681 sec.
Importing mascot dat files: integrated mascot dat file in 0.014596 sec.
Importing mascot dat files: connected hits in 1.194087 sec.
Saved mascot dat file 862180075.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.059456 sec.
Importing mascot dat files: integrated mascot dat file in 0.012828 sec.
Importing mascot dat files: connected hits in 1.102253 sec.
Saved mascot dat file 862180076.
Importing mascot dat files: integrated mascot dat file in 0.013154 sec.
Importing mascot dat files: connected hits in 1.042054 sec.
Saved mascot dat file 862180077.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.289462 sec.
Importing mascot dat files: integrated mascot dat file in 0.015743 sec.
Importing mascot dat files: connected hits in 1.089265 sec.
Saved mascot dat file 862180078.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.287476 sec.
Importing mascot dat files: integrated mascot dat file in 0.015746 sec.
Importing mascot dat files: connected hits in 0.953493 sec.
Saved mascot dat file 862180079.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.296643 sec.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.072783 sec.
Importing mascot dat files: integrated mascot dat file in 0.015318 sec.
Importing mascot dat files: connected hits in 1.145089 sec.
Saved mascot dat file 862180080.
Importing digestion log file: /home/umar/projects/svnprojs/msrepo/trunk/test/fixtures/HP-31755206541_4873_short.xml
  updated wells for primary microtiter plate 1811504200004873 in 0.071717 sec.
Importing mascot dat files: integrated mascot dat file in 0.014687 sec.
Importing mascot dat files: connected hits in 1.109391 sec.
Saved mascot dat file 862180081.
1762644658
rake aborted!
Command failed with status (1): [bundle exec /home/umar/.rvm/rubies/ruby-1....]
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:995:in `sh'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:1010:in `call'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:1010:in `sh'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:1094:in `sh'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/cucumber-0.10.2/lib/cucumber/rake/task.rb:79:in `run'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/cucumber-0.10.2/lib/cucumber/rake/task.rb:149:in `define_task'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:636:in `call'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:636:in `execute'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:631:in `each'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:631:in `execute'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:597:in `invoke_with_call_chain'
/home/umar/.rvm/rubies/ruby-1.8.7-p330/lib/ruby/1.8/monitor.rb:242:in `synchronize'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:590:in `invoke_with_call_chain'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:583:in `invoke'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2051:in `invoke_task'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2029:in `top_level'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2029:in `each'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2029:in `top_level'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2068:in `standard_exception_handling'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2023:in `top_level'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2001:in `run'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:2068:in `standard_exception_handling'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/lib/rake.rb:1998:in `run'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/gems/rake-0.8.7/bin/rake:31
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/bin/rake:19:in `load'
/home/umar/.rvm/gems/ruby-1.8.7-p330@msrepo/bin/rake:19