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May 22nd, 2018
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Perl 0.45 KB | None | 0 0
  1. my $orfIDqueryText = "SELECT ORF_ID, C_ID, ORF_name, proteinsequence FROM ORF";
  2.     my $orfIDquery = $dbHandler->prepare($orfIDqueryText);
  3.     $orfIDquery -> execute;
  4.  
  5.     open (my $fh, '>', 'output.txt') or die "Dit kan niet niet!: $!";
  6.     #get ID from result
  7.     while(my @orfIDarray = $orfIDquery -> fetchrow()){
  8.        
  9.        
  10.         ($orfID, $contigID, $naam, $seq)= @orfIDarray;
  11.         print "$seq\n";
  12.        
  13.        
  14.         print $fh "$orfID $contigID $naam\n";
  15.         print $fh "$seq\n";
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