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alexfoias

SCT- win 10 docker

Jul 22nd, 2019
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  1. PS C:\Users\alfoi_admin> docker run -p 2222:22 --rm -it -v c:/Users/docker_shared_folder://home/sct/docker_shared_folder neuropoly/sct:sct-v4.0.0-beta.0-ubuntu-18.04
  2. sct@84951df7e785:~$ sct_check_dependencies
  3.  
  4. --
  5. Spinal Cord Toolbox (version: 4.0.0-beta.0)
  6. Running /home/sct/sct_4.0.0-beta.0/scripts/sct_check_dependencies.py
  7. SCT info:
  8. - version: 4.0.0-beta.0
  9. - path: /home/sct/sct_4.0.0-beta.0
  10. OS: linux (Linux-4.9.125-linuxkit-x86_64-with-debian-buster-sid)
  11. CPU cores: Available: 2, Used by SCT: 2
  12. RAM: MemTotal: 2027864 kB
  13. total used free shared buff/cache available
  14. Mem: 1980 439 319 1 1222 1356
  15. Swap: 1023 0 1023
  16. Check Python executable.............................[OK]
  17. Using bundled python 2.7.12 |Continuum Analytics, Inc.| (default, Jul 2 2016, 17:42:40)
  18. [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] at /home/sct/sct_4.0.0-beta.0/python/bin/python
  19. Check if data are installed.........................[OK]
  20. Check if xlwt (1.0.0) is installed..................[OK]
  21. Check if xlutils (1.7.1) is installed...............[OK]
  22. Check if cryptography (1.6) is installed............[OK]
  23. Check if scikit-learn (0.17.1) is installed.........[OK]
  24. Check if scikit-image (0.12.3) is installed.........[OK]
  25. Check if pyqt (4.11.4) is installed.................[OK]
  26. Check if psutil (5.2.2) is installed................[OK]
  27. Check if matplotlib (1.5.1) is installed............[OK]
  28. Check if pip (9.0.1) is installed...................[OK]
  29. Check if requests (2.12.4) is installed.............[OK]
  30. Check if xlrd (0.9.4) is installed..................[OK]
  31. Check if pandas (0.18.1) is installed...............[OK]
  32. Check if dipy (0.11.0) is installed.................[OK]
  33. Check if tqdm (4.11.2) is installed.................[OK]
  34. Check if nibabel (2.1.0) is installed...............[OK]
  35. Check if Keras (2.0.6) is installed.................[OK]
  36. Check if futures (3.2.0) is installed...............[OK]
  37. Check if pytest-cov (2.5.1) is installed............[OK]
  38. Check if pytest (3.5.0) is installed................[OK]
  39. Check if nipy (0.4.1) is installed..................[OK]
  40. Check if h5py (2.7.0) is installed..................[OK]
  41. Check if tensorflow (1.3.0) is installed............[OK]
  42. Check if raven (6.2.1) is installed.................[OK]
  43. Check if numpy is installed (1.11.2)................[OK]
  44. Check if scipy is installed (0.18.1)................[OK]
  45. Check if spinalcordtoolbox is installed.............[OK]
  46. Check ANTs compatibility with OS ...................[OK]
  47. Check PropSeg compatibility with OS ................[OK]
  48. Check if figure can be opened.......................
  49. Second attempt to plot ...
  50.  
  51. Overwriting environment variable $MPLBACKEND=agg
  52. [FAIL]
  53. (<type 'exceptions.RuntimeError'>, RuntimeError(u'Invalid DISPLAY variable',), <traceback object at 0x7f925de03560>)
  54.  
  55. Total processing time: 0 min 12 s
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