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- PS C:\Users\alfoi_admin> docker run -p 2222:22 --rm -it -v c:/Users/docker_shared_folder://home/sct/docker_shared_folder neuropoly/sct:sct-v4.0.0-beta.0-ubuntu-18.04
- sct@84951df7e785:~$ sct_check_dependencies
- --
- Spinal Cord Toolbox (version: 4.0.0-beta.0)
- Running /home/sct/sct_4.0.0-beta.0/scripts/sct_check_dependencies.py
- SCT info:
- - version: 4.0.0-beta.0
- - path: /home/sct/sct_4.0.0-beta.0
- OS: linux (Linux-4.9.125-linuxkit-x86_64-with-debian-buster-sid)
- CPU cores: Available: 2, Used by SCT: 2
- RAM: MemTotal: 2027864 kB
- total used free shared buff/cache available
- Mem: 1980 439 319 1 1222 1356
- Swap: 1023 0 1023
- Check Python executable.............................[OK]
- Using bundled python 2.7.12 |Continuum Analytics, Inc.| (default, Jul 2 2016, 17:42:40)
- [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] at /home/sct/sct_4.0.0-beta.0/python/bin/python
- Check if data are installed.........................[OK]
- Check if xlwt (1.0.0) is installed..................[OK]
- Check if xlutils (1.7.1) is installed...............[OK]
- Check if cryptography (1.6) is installed............[OK]
- Check if scikit-learn (0.17.1) is installed.........[OK]
- Check if scikit-image (0.12.3) is installed.........[OK]
- Check if pyqt (4.11.4) is installed.................[OK]
- Check if psutil (5.2.2) is installed................[OK]
- Check if matplotlib (1.5.1) is installed............[OK]
- Check if pip (9.0.1) is installed...................[OK]
- Check if requests (2.12.4) is installed.............[OK]
- Check if xlrd (0.9.4) is installed..................[OK]
- Check if pandas (0.18.1) is installed...............[OK]
- Check if dipy (0.11.0) is installed.................[OK]
- Check if tqdm (4.11.2) is installed.................[OK]
- Check if nibabel (2.1.0) is installed...............[OK]
- Check if Keras (2.0.6) is installed.................[OK]
- Check if futures (3.2.0) is installed...............[OK]
- Check if pytest-cov (2.5.1) is installed............[OK]
- Check if pytest (3.5.0) is installed................[OK]
- Check if nipy (0.4.1) is installed..................[OK]
- Check if h5py (2.7.0) is installed..................[OK]
- Check if tensorflow (1.3.0) is installed............[OK]
- Check if raven (6.2.1) is installed.................[OK]
- Check if numpy is installed (1.11.2)................[OK]
- Check if scipy is installed (0.18.1)................[OK]
- Check if spinalcordtoolbox is installed.............[OK]
- Check ANTs compatibility with OS ...................[OK]
- Check PropSeg compatibility with OS ................[OK]
- Check if figure can be opened.......................
- Second attempt to plot ...
- Overwriting environment variable $MPLBACKEND=agg
- [FAIL]
- (<type 'exceptions.RuntimeError'>, RuntimeError(u'Invalid DISPLAY variable',), <traceback object at 0x7f925de03560>)
- Total processing time: 0 min 12 s
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