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  1. Mod1 <- glmer.nb(Nb_pt_nv ~ Substrate + (1|ID_bird), data = data).
  2. Mod2 <- glmer.nb(Nb_fix ~ Bathy_topo + (1|ID_bird), data=data).
  3.      
  4. Mod3 <- glmer.nb(Nb_pt_nv ~ Substrate:Bathy_topo + (1|ID_bird), data = data)
  5.      
  6. Generalized linear mixed model fit by maximum likelihood (Laplace Approxim tion) ['glmerMod']
  7.  Family: Negative Binomial(2.4986)  ( log )
  8. Formula: Nb_pt_nv ~ Substrate:Bathy_topo + (1 | ID_bird)
  9.    Data: F1_CB_all
  10.  
  11.      AIC      BIC   logLik deviance df.resid
  12.   7926.9   8000.7  -3949.4   7898.9     1427
  13.  
  14. Scaled residuals:
  15.     Min      1Q  Median      3Q     Max
  16. -1.2629 -0.7275 -0.2739  0.3640  7.4995
  17.  
  18. Random effects:
  19.  Groups  Name        Variance Std.Dev.
  20.  ID_bird (Intercept) 0.06609  0.2571  
  21. Number of obs: 1441, groups:  ID_bird, 10
  22.  
  23. Fixed effects:
  24.                             Estimate Std. Error z value Pr(>|z|)    
  25. (Intercept)                 2.54474    0.17982  14.151  < 2e-16 ***
  26. Sub1:Topo_Shelf            -1.36434    0.18114  -7.532 5.00e-14 ***
  27. Sub2:TopoShelf             -0.96808    0.18090  -5.351 8.73e-08 ***
  28. Sub3:TopoShelf             -1.08011    0.16919  -6.384 1.72e-10 ***
  29. Sub2:Topo_Shelf_break      -0.88011    0.62247  -1.414 0.157393    
  30. Sub3:Topo_Shelf_break      -0.57702    0.23998  -2.404 0.016198 *  
  31. Sub4:Topo_Slope            -0.56675    0.16678  -3.398 0.000678 ***
  32. Sub1:Topo_Slope            -1.23023    0.87412  -1.407 0.159308    
  33. Sub2:Topo_Slope            -0.76328    0.21249  -3.592 0.000328 ***
  34. Sub3:Topo_Slope            -0.62372    0.16481  -3.785 0.000154 ***
  35. Sub5:Topo_Slope            -0.58459    0.20093  -2.909 0.003620 **
  36. Sub4:Topo_Abyss            -0.07263    0.26459  -0.275 0.783688
  37.      
  38. Mod4 <- glmer.nb(Nb_pt_nv ~ Substrate * Bathy_topo + (1|ID_bird), data=data)
  39.      
  40. Generalized linear mixed model fit by maximum likelihood (Laplace Approximation) ['glmerMod']
  41.  Family: Negative Binomial(2.4986)  ( log )
  42. Formula: Nb_fix ~ Bathy_topo * Substrate+ (1 | ID_bird)
  43.    Data: F1_CB_all
  44.  
  45.      AIC      BIC   logLik deviance df.resid
  46.   7926.9   8000.7  -3949.4   7898.9     1427
  47.  
  48. Scaled residuals:
  49.     Min      1Q  Median      3Q     Max
  50. -1.2629 -0.7275 -0.2739  0.3640  7.4995
  51.  
  52. Random effects:
  53.  Groups  Name        Variance Std.Dev.
  54.  ID_bird (Intercept) 0.06609  0.2571  
  55. Number of obs: 1441, groups:  ID_bird, 10
  56.  
  57. Fixed effects:
  58.                                   Estimate Std. Error z value Pr(>|z|)    
  59. (Intercept)                        1.52160    0.10993  13.841  < 2e-16 ***
  60. Topo_Shelf_break                   0.50309    0.18218   2.762  0.00575 **
  61. Topo_Slope                         0.45639    0.05822   7.839 4.53e-15 ***
  62. Topo_Abyss                         0.95051    0.23844   3.986 6.71e-05 ***
  63. Sub1                              -0.34120    0.11644  -2.930  0.00339 **
  64. Sub2                               0.05506    0.10928   0.504  0.61439    
  65. Sub3                              -0.05697    0.05676  -1.004  0.31555    
  66. Sub5                               0.07263    0.26456   0.275  0.78367    
  67. Topo_Slope:Sub1                   -0.32229    0.86530  -0.372  0.70955    
  68. Topo_Shelf_break:Sub2             -0.41511    0.64224  -0.646  0.51805    
  69. Topo_Slope:Sub2                   -0.25159    0.17062  -1.475  0.14033    
  70. Topo_Slope:Sub5                   -0.09048    0.29375  -0.308  0.75808
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