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  1. os.environ["_ModuleTable007_"] = "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";
  2. os.environ["_ModuleTable_Sz_"] = "7";
  3. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  4. /opt/easybuild/modules/all/Core/foss/2018a.lua:
  5. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  6. help([[
  7. Description
  8. ===========
  9. GNU Compiler Collection (GCC) based compiler toolchain, including
  10. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  11.  
  12.  
  13. More information
  14. ================
  15. - Homepage: (none)
  16. ]])
  17. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  18. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  19. whatis("Homepage: (none)")
  20. conflict("foss")
  21. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018a")
  22. setenv("EBVERSIONFOSS","2018a")
  23. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018a/easybuild/Core-foss-2018a-easybuild-devel")
  24.  
  25.  
  26. == 2018-07-20 10:54:37,893 modules.py:557 DEBUG Found cached result for 'module show foss/2018a' with key '('MODULEPATH=/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all', 'lmod', 'foss/2018a')': os.environ["MODULEPATH"] = "/opt/easybuild/modules/all/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2:/opt/easybuild/modules/all/Compiler/GCC/6.4.0-2.28:/opt/easybuild/modules/all/Compiler/GCCcore/6.4.0:/opt/easybuild/modules/all/Core:/opt/easybuild/modules/all";
  27. os.environ["_ModuleTable001_"] = "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";
  28. os.environ["_ModuleTable002_"] = "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";
  29. os.environ["_ModuleTable003_"] = "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";
  30. os.environ["_ModuleTable004_"] = "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";
  31. os.environ["_ModuleTable005_"] = "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";
  32. os.environ["_ModuleTable006_"] = "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";
  33. os.environ["_ModuleTable007_"] = "NSxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0zLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJudW1hY3RsLzIuMC4xMSIsfSx9LG1wYXRoQT17Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL01QSS9HQ0MvNi40LjAtMi4yOC9PcGVuTVBJLzIuMS4yIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29tcGlsZXIvR0NDLzYuNC4wLTIuMjgiLCIvb3B0L2Vhc3lidWlsZC9tb2R1bGVzL2FsbC9Db21waWxlci9HQ0Njb3JlLzYuNC4wIiwiL29wdC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwvQ29yZSIsIi9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvZWFzeWJ1aWxkL21vZHVsZXMvYWxsL0NvcmUiLH0=";
  34. os.environ["_ModuleTable_Sz_"] = "7";
  35. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  36. /opt/easybuild/modules/all/Core/foss/2018a.lua:
  37. -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
  38. help([[
  39. Description
  40. ===========
  41. GNU Compiler Collection (GCC) based compiler toolchain, including
  42. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
  43.  
  44.  
  45. More information
  46. ================
  47. - Homepage: (none)
  48. ]])
  49. whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
  50. OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.")
  51. whatis("Homepage: (none)")
  52. conflict("foss")
  53. setenv("EBROOTFOSS","/opt/easybuild/software/Core/foss/2018a")
  54. setenv("EBVERSIONFOSS","2018a")
  55. setenv("EBDEVELFOSS","/opt/easybuild/software/Core/foss/2018a/easybuild/Core-foss-2018a-easybuild-devel")
  56.  
  57.  
  58. == 2018-07-20 10:54:37,894 toolchain.py:600 DEBUG List of toolchain dependencies from toolchain module: ['GCC/6.4.0-2.28', 'OpenMPI/2.1.2', 'OpenBLAS/0.2.20', 'FFTW/3.3.7', 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20']
  59. == 2018-07-20 10:54:37,895 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2018a', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'foss', 'full_mod_name': 'Core/foss/2018a', 'hidden': False, 'parsed': True, 'short_mod_name': 'foss/2018a'}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']}
  60. == 2018-07-20 10:54:37,895 toolchain.py:289 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
  61. == 2018-07-20 10:54:37,896 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  62. == 2018-07-20 10:54:37,896 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  63. == 2018-07-20 10:54:37,896 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  64. == 2018-07-20 10:54:37,897 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  65. == 2018-07-20 10:54:37,897 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False
  66. == 2018-07-20 10:54:37,897 toolchain.py:610 DEBUG Removing BLACS from list of optional toolchain elements.
  67. == 2018-07-20 10:54:37,897 toolchain.py:613 DEBUG List of toolchain elements from toolchain definition: set(['GCC', 'FFTW', 'OpenMPI', 'ScaLAPACK', 'OpenBLAS'])
  68. == 2018-07-20 10:54:37,898 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True
  69. == 2018-07-20 10:54:37,898 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  70. == 2018-07-20 10:54:37,898 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  71. == 2018-07-20 10:54:37,898 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  72. == 2018-07-20 10:54:37,899 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: False
  73. == 2018-07-20 10:54:37,899 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  74. == 2018-07-20 10:54:37,899 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  75. == 2018-07-20 10:54:37,899 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  76. == 2018-07-20 10:54:37,900 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True
  77. == 2018-07-20 10:54:37,900 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False
  78. == 2018-07-20 10:54:37,900 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  79. == 2018-07-20 10:54:37,900 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True
  80. == 2018-07-20 10:54:37,901 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  81. == 2018-07-20 10:54:37,901 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  82. == 2018-07-20 10:54:37,901 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False
  83. == 2018-07-20 10:54:37,901 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  84. == 2018-07-20 10:54:37,902 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  85. == 2018-07-20 10:54:37,902 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  86. == 2018-07-20 10:54:37,902 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False
  87. == 2018-07-20 10:54:37,902 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True
  88. == 2018-07-20 10:54:37,903 mns.py:164 DEBUG Checking whether 'GCC/6.4.0-2.28' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  89. == 2018-07-20 10:54:37,903 mns.py:164 DEBUG Checking whether 'OpenMPI/2.1.2' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  90. == 2018-07-20 10:54:37,903 mns.py:164 DEBUG Checking whether 'OpenBLAS/0.2.20' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: True
  91. == 2018-07-20 10:54:37,903 mns.py:164 DEBUG Checking whether 'FFTW/3.3.7' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  92. == 2018-07-20 10:54:37,904 mns.py:164 DEBUG Checking whether 'ScaLAPACK/2.0.2-OpenBLAS-0.2.20' is a module name for software with name 'OpenBLAS' via regex ^OpenBLAS(/\S+)?$: False
  93. == 2018-07-20 10:54:37,904 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match!
  94. == 2018-07-20 10:54:37,906 options.py:90 WARNING option: option with name _opt_CC returns None
  95. == 2018-07-20 10:54:37,906 options.py:90 WARNING option: option with name _opt_CXX returns None
  96. == 2018-07-20 10:54:37,906 options.py:90 WARNING option: option with name _opt_F77 returns None
  97. == 2018-07-20 10:54:37,906 options.py:90 WARNING option: option with name _opt_F90 returns None
  98. == 2018-07-20 10:54:37,906 options.py:90 WARNING option: option with name _opt_FC returns None
  99. == 2018-07-20 10:54:37,907 compiler.py:334 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
  100. == 2018-07-20 10:54:37,911 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
  101. == 2018-07-20 10:54:37,913 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2 for OpenMPI was found in environment
  102. == 2018-07-20 10:54:37,915 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20 for OpenBLAS was found in environment
  103. == 2018-07-20 10:54:37,916 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20 for OpenBLAS was found in environment
  104. == 2018-07-20 10:54:37,916 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib64 was not found
  105. == 2018-07-20 10:54:37,922 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20 for OpenBLAS was found in environment
  106. == 2018-07-20 10:54:37,922 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib64 was not found
  107. == 2018-07-20 10:54:37,922 toolchain.py:289 DEBUG get_software_version software version 2.0.2 for ScaLAPACK was found in environment
  108. == 2018-07-20 10:54:37,926 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20 for ScaLAPACK was found in environment
  109. == 2018-07-20 10:54:37,927 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20 for ScaLAPACK was found in environment
  110. == 2018-07-20 10:54:37,927 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib64 was not found
  111. == 2018-07-20 10:54:37,928 toolchain.py:289 DEBUG get_software_version software version 3.3.7 for FFTW was found in environment
  112. == 2018-07-20 10:54:37,929 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7 for FFTW was found in environment
  113. == 2018-07-20 10:54:37,929 toolchain.py:280 DEBUG get_software_root software root /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7 for FFTW was found in environment
  114. == 2018-07-20 10:54:37,930 variables.py:201 WARNING flags_for_subdirs: directory /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib64 was not found
  115. == 2018-07-20 10:54:37,931 toolchain.py:692 DEBUG prepare: set additional variables onlymod=False
  116. == 2018-07-20 10:54:37,936 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include
  117. == 2018-07-20 10:54:37,936 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  118. == 2018-07-20 10:54:37,936 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  119. == 2018-07-20 10:54:37,936 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include
  120. == 2018-07-20 10:54:37,936 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  121. == 2018-07-20 10:54:37,936 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  122. == 2018-07-20 10:54:37,937 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib
  123. == 2018-07-20 10:54:37,937 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  124. == 2018-07-20 10:54:37,937 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  125. == 2018-07-20 10:54:37,937 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  126. == 2018-07-20 10:54:37,937 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  127. == 2018-07-20 10:54:37,937 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  128. == 2018-07-20 10:54:37,938 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
  129. == 2018-07-20 10:54:37,938 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  130. == 2018-07-20 10:54:37,938 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  131. == 2018-07-20 10:54:37,938 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib
  132. == 2018-07-20 10:54:37,938 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  133. == 2018-07-20 10:54:37,938 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  134. == 2018-07-20 10:54:37,939 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  135. == 2018-07-20 10:54:37,939 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  136. == 2018-07-20 10:54:37,939 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  137. == 2018-07-20 10:54:37,939 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a
  138. == 2018-07-20 10:54:37,939 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  139. == 2018-07-20 10:54:37,939 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  140. == 2018-07-20 10:54:37,940 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CC to gcc
  141. == 2018-07-20 10:54:37,940 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
  142. == 2018-07-20 10:54:37,940 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
  143. == 2018-07-20 10:54:37,940 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
  144. == 2018-07-20 10:54:37,940 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  145. == 2018-07-20 10:54:37,940 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  146. == 2018-07-20 10:54:37,940 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include
  147. == 2018-07-20 10:54:37,941 environment.py:97 INFO Environment variable CPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  148. == 2018-07-20 10:54:37,941 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include -I/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  149. == 2018-07-20 10:54:37,941 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXX to g++
  150. == 2018-07-20 10:54:37,941 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
  151. == 2018-07-20 10:54:37,941 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
  152. == 2018-07-20 10:54:37,942 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
  153. == 2018-07-20 10:54:37,942 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  154. == 2018-07-20 10:54:37,942 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  155. == 2018-07-20 10:54:37,942 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F77 to gfortran
  156. == 2018-07-20 10:54:37,942 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
  157. == 2018-07-20 10:54:37,942 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
  158. == 2018-07-20 10:54:37,943 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90 to gfortran
  159. == 2018-07-20 10:54:37,943 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
  160. == 2018-07-20 10:54:37,943 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
  161. == 2018-07-20 10:54:37,943 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
  162. == 2018-07-20 10:54:37,943 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  163. == 2018-07-20 10:54:37,943 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  164. == 2018-07-20 10:54:37,943 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FC to gfortran
  165. == 2018-07-20 10:54:37,944 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
  166. == 2018-07-20 10:54:37,944 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
  167. == 2018-07-20 10:54:37,944 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
  168. == 2018-07-20 10:54:37,944 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  169. == 2018-07-20 10:54:37,944 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  170. == 2018-07-20 10:54:37,944 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC
  171. == 2018-07-20 10:54:37,945 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  172. == 2018-07-20 10:54:37,945 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno -fopenmp -fPIC (previously undefined)
  173. == 2018-07-20 10:54:37,945 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include
  174. == 2018-07-20 10:54:37,945 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  175. == 2018-07-20 10:54:37,945 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  176. == 2018-07-20 10:54:37,945 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib
  177. == 2018-07-20 10:54:37,946 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  178. == 2018-07-20 10:54:37,946 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  179. == 2018-07-20 10:54:37,946 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a
  180. == 2018-07-20 10:54:37,946 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
  181. == 2018-07-20 10:54:37,946 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
  182. == 2018-07-20 10:54:37,946 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3_omp -fftw3 -pthread
  183. == 2018-07-20 10:54:37,947 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3_omp -fftw3 -pthread (previously undefined)
  184. == 2018-07-20 10:54:37,947 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3_omp -fftw3 -pthread (previously undefined)
  185. == 2018-07-20 10:54:37,947 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include
  186. == 2018-07-20 10:54:37,947 environment.py:97 INFO Environment variable FFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  187. == 2018-07-20 10:54:37,947 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/include (previously undefined)
  188. == 2018-07-20 10:54:37,947 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib
  189. == 2018-07-20 10:54:37,948 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  190. == 2018-07-20 10:54:37,948 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  191. == 2018-07-20 10:54:37,948 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a
  192. == 2018-07-20 10:54:37,948 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
  193. == 2018-07-20 10:54:37,948 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
  194. == 2018-07-20 10:54:37,948 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3_omp.a,libfftw3.a,libpthread.a
  195. == 2018-07-20 10:54:37,949 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined)
  196. == 2018-07-20 10:54:37,949 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3_omp.a,libfftw3.a,libpthread.a (previously undefined)
  197. == 2018-07-20 10:54:37,949 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
  198. == 2018-07-20 10:54:37,949 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
  199. == 2018-07-20 10:54:37,949 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
  200. == 2018-07-20 10:54:37,949 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include
  201. == 2018-07-20 10:54:37,950 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  202. == 2018-07-20 10:54:37,950 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/include (previously undefined)
  203. == 2018-07-20 10:54:37,950 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib
  204. == 2018-07-20 10:54:37,950 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  205. == 2018-07-20 10:54:37,950 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib (previously undefined)
  206. == 2018-07-20 10:54:37,950 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
  207. == 2018-07-20 10:54:37,951 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  208. == 2018-07-20 10:54:37,951 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  209. == 2018-07-20 10:54:37,951 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
  210. == 2018-07-20 10:54:37,951 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  211. == 2018-07-20 10:54:37,951 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
  212. == 2018-07-20 10:54:37,951 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib64 -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib -L/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib
  213. == 2018-07-20 10:54:37,952 environment.py:97 INFO Environment variable LDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib64 -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib -L/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  214. == 2018-07-20 10:54:37,952 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib64 -L/opt/easybuild/software/Core/GCCcore/6.4.0/lib -L/opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib -L/opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/FFTW/3.3.7/lib (previously undefined)
  215. == 2018-07-20 10:54:37,952 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran
  216. == 2018-07-20 10:54:37,952 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
  217. == 2018-07-20 10:54:37,952 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
  218. == 2018-07-20 10:54:37,952 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran
  219. == 2018-07-20 10:54:37,953 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
  220. == 2018-07-20 10:54:37,953 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
  221. == 2018-07-20 10:54:37,953 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3
  222. == 2018-07-20 10:54:37,953 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
  223. == 2018-07-20 10:54:37,953 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
  224. == 2018-07-20 10:54:37,953 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3_omp -lfftw3 -lpthread
  225. == 2018-07-20 10:54:37,954 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined)
  226. == 2018-07-20 10:54:37,954 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3_omp -lfftw3 -lpthread (previously undefined)
  227. == 2018-07-20 10:54:37,954 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran
  228. == 2018-07-20 10:54:37,954 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
  229. == 2018-07-20 10:54:37,954 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
  230. == 2018-07-20 10:54:37,954 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran
  231. == 2018-07-20 10:54:37,955 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
  232. == 2018-07-20 10:54:37,955 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
  233. == 2018-07-20 10:54:37,955 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran
  234. == 2018-07-20 10:54:37,955 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
  235. == 2018-07-20 10:54:37,955 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
  236. == 2018-07-20 10:54:37,955 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran
  237. == 2018-07-20 10:54:37,956 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
  238. == 2018-07-20 10:54:37,956 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
  239. == 2018-07-20 10:54:37,956 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
  240. == 2018-07-20 10:54:37,956 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
  241. == 2018-07-20 10:54:37,956 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
  242. == 2018-07-20 10:54:37,956 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran
  243. == 2018-07-20 10:54:37,957 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
  244. == 2018-07-20 10:54:37,957 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
  245. == 2018-07-20 10:54:37,957 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran
  246. == 2018-07-20 10:54:37,957 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
  247. == 2018-07-20 10:54:37,957 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
  248. == 2018-07-20 10:54:37,957 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
  249. == 2018-07-20 10:54:37,958 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
  250. == 2018-07-20 10:54:37,958 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
  251. == 2018-07-20 10:54:37,958 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
  252. == 2018-07-20 10:54:37,958 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
  253. == 2018-07-20 10:54:37,958 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
  254. == 2018-07-20 10:54:37,958 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
  255. == 2018-07-20 10:54:37,959 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
  256. == 2018-07-20 10:54:37,959 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
  257. == 2018-07-20 10:54:37,959 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
  258. == 2018-07-20 10:54:37,959 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
  259. == 2018-07-20 10:54:37,959 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
  260. == 2018-07-20 10:54:37,959 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
  261. == 2018-07-20 10:54:37,960 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
  262. == 2018-07-20 10:54:37,960 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
  263. == 2018-07-20 10:54:37,960 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
  264. == 2018-07-20 10:54:37,960 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
  265. == 2018-07-20 10:54:37,960 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
  266. == 2018-07-20 10:54:37,960 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
  267. == 2018-07-20 10:54:37,961 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
  268. == 2018-07-20 10:54:37,961 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
  269. == 2018-07-20 10:54:37,961 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include
  270. == 2018-07-20 10:54:37,961 environment.py:97 INFO Environment variable MPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include (previously undefined)
  271. == 2018-07-20 10:54:37,961 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/include (previously undefined)
  272. == 2018-07-20 10:54:37,961 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib
  273. == 2018-07-20 10:54:37,962 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib (previously undefined)
  274. == 2018-07-20 10:54:37,962 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib (previously undefined)
  275. == 2018-07-20 10:54:37,962 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/libmpi.so
  276. == 2018-07-20 10:54:37,962 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/libmpi.so (previously undefined)
  277. == 2018-07-20 10:54:37,962 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /opt/easybuild/software/Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2/lib/libmpi.so (previously undefined)
  278. == 2018-07-20 10:54:37,962 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
  279. == 2018-07-20 10:54:37,963 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
  280. == 2018-07-20 10:54:37,963 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
  281. == 2018-07-20 10:54:37,963 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
  282. == 2018-07-20 10:54:37,963 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
  283. == 2018-07-20 10:54:37,963 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
  284. == 2018-07-20 10:54:37,963 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
  285. == 2018-07-20 10:54:37,964 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
  286. == 2018-07-20 10:54:37,964 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
  287. == 2018-07-20 10:54:37,964 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
  288. == 2018-07-20 10:54:37,964 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
  289. == 2018-07-20 10:54:37,964 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
  290. == 2018-07-20 10:54:37,965 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
  291. == 2018-07-20 10:54:37,965 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
  292. == 2018-07-20 10:54:37,965 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
  293. == 2018-07-20 10:54:37,965 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
  294. == 2018-07-20 10:54:37,965 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
  295. == 2018-07-20 10:54:37,965 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
  296. == 2018-07-20 10:54:37,966 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native
  297. == 2018-07-20 10:54:37,966 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  298. == 2018-07-20 10:54:37,966 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined)
  299. == 2018-07-20 10:54:37,966 toolchain.py:901 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno
  300. == 2018-07-20 10:54:37,966 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
  301. == 2018-07-20 10:54:37,966 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
  302. == 2018-07-20 10:54:37,967 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include
  303. == 2018-07-20 10:54:37,967 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include (previously undefined)
  304. == 2018-07-20 10:54:37,967 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/include (previously undefined)
  305. == 2018-07-20 10:54:37,967 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib
  306. == 2018-07-20 10:54:37,967 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib (previously undefined)
  307. == 2018-07-20 10:54:37,967 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /opt/easybuild/software/MPI/GCC/6.4.0-2.28/OpenMPI/2.1.2/ScaLAPACK/2.0.2-OpenBLAS-0.2.20/lib (previously undefined)
  308. == 2018-07-20 10:54:37,968 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a
  309. == 2018-07-20 10:54:37,968 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
  310. == 2018-07-20 10:54:37,968 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
  311. == 2018-07-20 10:54:37,968 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a
  312. == 2018-07-20 10:54:37,968 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
  313. == 2018-07-20 10:54:37,968 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
  314. == 2018-07-20 10:54:37,969 toolchain.py:289 DEBUG get_software_version software version 2.1.2 for OpenMPI was found in environment
  315. == 2018-07-20 10:54:37,969 easyblock.py:1442 INFO Using /mnt/ramdisk/Velvet/1.2.10/foss-2018a-mt-kmer_191/velvet_1.2.10/ as start dir
  316. == 2018-07-20 10:54:37,969 easyblock.py:1445 DEBUG Changed to real build directory /mnt/ramdisk/Velvet/1.2.10/foss-2018a-mt-kmer_191/velvet_1.2.10/ (start_dir)
  317. == 2018-07-20 10:54:37,969 easyblock.py:2520 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
  318. == 2018-07-20 10:54:37,970 build_log.py:233 INFO configuring...
  319. == 2018-07-20 10:54:37,970 easyblock.py:2528 INFO Starting configure step
  320. == 2018-07-20 10:54:37,970 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fc7e59384d0>
  321. == 2018-07-20 10:54:37,970 templates.py:178 DEBUG version found in easyconfig is 1.2.10
  322. == 2018-07-20 10:54:37,970 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
  323. == 2018-07-20 10:54:37,970 templates.py:222 DEBUG name: github_account, config: None
  324. == 2018-07-20 10:54:37,971 templates.py:222 DEBUG name: name, config: Velvet
  325. == 2018-07-20 10:54:37,971 templates.py:222 DEBUG name: version, config: 1.2.10
  326. == 2018-07-20 10:54:37,971 templates.py:222 DEBUG name: versionsuffix, config: -mt-kmer_191
  327. == 2018-07-20 10:54:37,971 templates.py:222 DEBUG name: versionprefix, config:
  328. == 2018-07-20 10:54:37,971 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fc7e59384d0>
  329. == 2018-07-20 10:54:37,971 templates.py:178 DEBUG version found in easyconfig is 1.2.10
  330. == 2018-07-20 10:54:37,972 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
  331. == 2018-07-20 10:54:37,972 templates.py:222 DEBUG name: github_account, config: None
  332. == 2018-07-20 10:54:37,972 templates.py:222 DEBUG name: name, config: Velvet
  333. == 2018-07-20 10:54:37,972 templates.py:222 DEBUG name: version, config: 1.2.10
  334. == 2018-07-20 10:54:37,972 templates.py:222 DEBUG name: versionsuffix, config: -mt-kmer_191
  335. == 2018-07-20 10:54:37,972 templates.py:222 DEBUG name: versionprefix, config:
  336. == 2018-07-20 10:54:37,973 easyblock.py:2534 INFO Running method configure_step part of step configure
  337. == 2018-07-20 10:54:37,973 easyblock.py:2520 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
  338. == 2018-07-20 10:54:37,973 build_log.py:233 INFO building...
  339. == 2018-07-20 10:54:37,973 easyblock.py:2528 INFO Starting build step
  340. == 2018-07-20 10:54:37,973 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fc7e59384d0>
  341. == 2018-07-20 10:54:37,974 templates.py:178 DEBUG version found in easyconfig is 1.2.10
  342. == 2018-07-20 10:54:37,974 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
  343. == 2018-07-20 10:54:37,974 templates.py:222 DEBUG name: github_account, config: None
  344. == 2018-07-20 10:54:37,974 templates.py:222 DEBUG name: name, config: Velvet
  345. == 2018-07-20 10:54:37,974 templates.py:222 DEBUG name: version, config: 1.2.10
  346. == 2018-07-20 10:54:37,974 templates.py:222 DEBUG name: versionsuffix, config: -mt-kmer_191
  347. == 2018-07-20 10:54:37,975 templates.py:222 DEBUG name: versionprefix, config:
  348. == 2018-07-20 10:54:37,975 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fc7e59384d0>
  349. == 2018-07-20 10:54:37,975 templates.py:178 DEBUG version found in easyconfig is 1.2.10
  350. == 2018-07-20 10:54:37,975 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s
  351. == 2018-07-20 10:54:37,975 templates.py:222 DEBUG name: github_account, config: None
  352. == 2018-07-20 10:54:37,975 templates.py:222 DEBUG name: name, config: Velvet
  353. == 2018-07-20 10:54:37,976 templates.py:222 DEBUG name: version, config: 1.2.10
  354. == 2018-07-20 10:54:37,976 templates.py:222 DEBUG name: versionsuffix, config: -mt-kmer_191
  355. == 2018-07-20 10:54:37,976 templates.py:222 DEBUG name: versionprefix, config:
  356. == 2018-07-20 10:54:37,976 easyblock.py:2534 INFO Running method build_step part of step build
  357. == 2018-07-20 10:54:37,976 run.py:135 DEBUG run_cmd: Output of " make -j 8 OPENMP=1 MAXKMERLENGTH=191 LONGSEQUENCES=1" will be logged to /tmp/eb-hHHKE1/easybuild-run_cmd-UNIu0L.log
  358. == 2018-07-20 10:54:37,977 run.py:173 DEBUG run_cmd: running cmd make -j 8 OPENMP=1 MAXKMERLENGTH=191 LONGSEQUENCES=1 (in /mnt/ramdisk/Velvet/1.2.10/foss-2018a-mt-kmer_191/velvet_1.2.10)
  359. == 2018-07-20 10:54:37,977 run.py:192 INFO running cmd: make -j 8 OPENMP=1 MAXKMERLENGTH=191 LONGSEQUENCES=1
  360. == 2018-07-20 10:54:39,510 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/EB-develop/vsc-base/lib/vsc/utils/exceptions.py:124 in __init__): cmd " make -j 8 OPENMP=1 MAXKMERLENGTH=191 LONGSEQUENCES=1" exited with exit code 2 and output:
  361. rm obj/*.o obj/dbg/*.o
  362. mkdir -p obj
  363. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/tightString.c -o obj/tightString.o
  364. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/run.c -o obj/run.o
  365. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/splay.c -o obj/splay.o
  366. rm: cannot remove 'obj/*.o': No such file or directory
  367. rm: cannot remove 'obj/dbg/*.o': No such file or directory
  368. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/splayTable.c -o obj/splayTable.o
  369. Makefile:51: recipe for target 'cleanobj' failed
  370. make: [cleanobj] Error 1 (ignored)
  371. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/graph.c -o obj/graph.o
  372. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/run2.c -o obj/run2.o
  373. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/fibHeap.c -o obj/fibHeap.o
  374. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/fib.c -o obj/fib.o
  375. In file included from src/run.h:34:0,
  376. from src/run.c:31:
  377. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  378. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  379. ^~~~~~~~~~~~~~~~~~~~~~~~
  380. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  381. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  382. ^~~~~~~~~~~~~~~~~~~~~~~~
  383. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  384. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  385. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  386. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  387. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  388. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  389. src/splayTable.c: In function ‘inputSequenceArrayIntoSplayTableAndArchive’:
  390. src/splayTable.c:1060:14: warning: variable ‘refElem’ set but not used [-Wunused-but-set-variable]
  391. RefInfo refElem;
  392. ^~~~~~~
  393. In file included from src/run.h:34:0,
  394. from src/run2.c:26:
  395. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  396. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  397. ^~~~~~~~~~~~~~~~~~~~~~~~
  398. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  399. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  400. ^~~~~~~~~~~~~~~~~~~~~~~~
  401. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  402. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  403. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  404. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  405. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  406. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  407. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/concatenatedGraph.c -o obj/concatenatedGraph.o
  408. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/passageMarker.c -o obj/passageMarker.o
  409. In file included from src/concatenatedGraph.c:25:0:
  410. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  411. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  412. ^~~~~~~~~~~~~~~~~~~~~~~~
  413. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  414. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  415. ^~~~~~~~~~~~~~~~~~~~~~~~
  416. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  417. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  418. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  419. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  420. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  421. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  422. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/graphStats.c -o obj/graphStats.o
  423. In file included from src/passageMarker.c:29:0:
  424. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  425. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  426. ^~~~~~~~~~~~~~~~~~~~~~~~
  427. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  428. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  429. ^~~~~~~~~~~~~~~~~~~~~~~~
  430. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  431. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  432. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  433. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  434. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  435. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  436. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/correctedGraph.c -o obj/correctedGraph.o
  437. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/dfib.c -o obj/dfib.o
  438. In file included from src/graphStats.c:28:0:
  439. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  440. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  441. ^~~~~~~~~~~~~~~~~~~~~~~~
  442. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  443. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  444. ^~~~~~~~~~~~~~~~~~~~~~~~
  445. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  446. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  447. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  448. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  449. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  450. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  451. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/dfibHeap.c -o obj/dfibHeap.o
  452. In file included from src/correctedGraph.c:26:0:
  453. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  454. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  455. ^~~~~~~~~~~~~~~~~~~~~~~~
  456. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  457. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  458. ^~~~~~~~~~~~~~~~~~~~~~~~
  459. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  460. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  461. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  462. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  463. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  464. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  465. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/recycleBin.c -o obj/recycleBin.o
  466. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/readSet.c -o obj/readSet.o
  467. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/binarySequences.c -o obj/binarySequences.o
  468. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/shortReadPairs.c -o obj/shortReadPairs.o
  469. src/readSet.c:38:18: fatal error: zlib.h: No such file or directory
  470. #include <zlib.h>
  471. ^
  472. compilation terminated.
  473. Makefile:110: recipe for target 'obj/readSet.o' failed
  474. make: *** [obj/readSet.o] Error 1
  475. make: *** Waiting for unfinished jobs....
  476. src/binarySequences.c: In function ‘importCnyReadSet’:
  477. src/binarySequences.c:314:12: warning: variable ‘refElem’ set but not used [-Wunused-but-set-variable]
  478. RefInfo refElem;
  479. ^~~~~~~
  480. In file included from src/shortReadPairs.c:27:0:
  481. src/graph.h:178:20: warning: inline function ‘setShortReadMarkerOffset’ declared but never defined
  482. extern inline void setShortReadMarkerOffset(ShortReadMarker * marker,
  483. ^~~~~~~~~~~~~~~~~~~~~~~~
  484. src/graph.h:177:27: warning: inline function ‘getShortReadMarkerOffset’ declared but never defined
  485. extern inline ShortLength getShortReadMarkerOffset(ShortReadMarker * marker);
  486. ^~~~~~~~~~~~~~~~~~~~~~~~
  487. src/graph.h:174:20: warning: inline function ‘setShortReadMarkerPosition’ declared but never defined
  488. extern inline void setShortReadMarkerPosition(ShortReadMarker * marker,
  489. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  490. src/graph.h:173:26: warning: inline function ‘getShortReadMarkerPosition’ declared but never defined
  491. extern inline Coordinate getShortReadMarkerPosition(ShortReadMarker * marker);
  492. ^~~~~~~~~~~~~~~~~~~~~~~~~~
  493. (at easybuild/EB-develop/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output)
  494. == 2018-07-20 10:54:39,510 easyblock.py:2776 WARNING build failed (first 300 chars): cmd " make -j 8 OPENMP=1 MAXKMERLENGTH=191 LONGSEQUENCES=1" exited with exit code 2 and output:
  495. rm obj/*.o obj/dbg/*.o
  496. mkdir -p obj
  497. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENGTH=191 -D CATEGORIES=2 -D LONGSEQUENCES -c src/tightString.c -o obj/tightString.o
  498. gcc -Wall -m64 -fopenmp -O3 -D MAXKMERLENG
  499. == 2018-07-20 10:54:39,510 easyblock.py:281 INFO Closing log for application name Velvet version 1.2.10
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