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Should be noted that originally I ungziped and applied the patch from the distribution:

 

php5_5.3.10-1ubuntu3.2.diff.gz

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/libtool2.2.patch

patching file scripts/phpize.in

Hunk #1 FAILED at 5.

1 out of 2 hunks FAILED -- saving rejects to file scripts/phpize.in.rej

root@Web:/usr/src/php-5.3.10# vim scripts/phpize.in.rej

 

        **  Applied patch manually **

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/115-autoconf_ftbfs.patch

patching file configure.in

Hunk #1 succeeded at 1 with fuzz 1.

patching file ext/standard/config.m4

patching file scripts/phpize.m4

 

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/CVE-2012-0781.patch

patching file ext/tidy/tests/004.phpt

patching file ext/tidy/tests/bug54682.phpt

patching file ext/tidy/tidy.c

 

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/CVE-2012-1172.patch

patching file main/rfc1867.c

patching file tests/basic/bug55500.phpt

 

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/CVE-2012-2143.patch

patching file ext/standard/crypt_freesec.c

patching file ext/standard/tests/strings/crypt_chars.phpt

 

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/CVE-2012-2386.patch

patching file ext/phar/tar.c

 

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/033-we_WANT_libtool.patch

patching file build/build2.mk

 

        -- reconfigure + build failed with same error --

 

root@Web:/usr/src/php-5.3.10# patch --strip=1 -i debian/patches/001-libtool_fixes.patch

patching file TSRM/configure.in

patching file configure.in

 

        ++ reconfigure (which produced a lot of warnings about suspicious cache ids  on a bunch of ext/pdo_<different-things>/config.m4 ++

 

        +-+- build basically worked except for failures on my new php extension -+-+