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Feb 20th, 2019
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  1. Mod1 <- glmer.nb(Nb_pt_nv ~ Substrate + (1|ID_bird), data = data).
  2. Mod2 <- glmer.nb(Nb_fix ~ Bathy_topo + (1|ID_bird), data=data).
  3.  
  4. Mod3 <- glmer.nb(Nb_pt_nv ~ Substrate:Bathy_topo + (1|ID_bird), data = data)
  5.  
  6. Generalized linear mixed model fit by maximum likelihood (Laplace Approxim tion) ['glmerMod']
  7. Family: Negative Binomial(2.4986) ( log )
  8. Formula: Nb_pt_nv ~ Substrate:Bathy_topo + (1 | ID_bird)
  9. Data: F1_CB_all
  10.  
  11. AIC BIC logLik deviance df.resid
  12. 7926.9 8000.7 -3949.4 7898.9 1427
  13.  
  14. Scaled residuals:
  15. Min 1Q Median 3Q Max
  16. -1.2629 -0.7275 -0.2739 0.3640 7.4995
  17.  
  18. Random effects:
  19. Groups Name Variance Std.Dev.
  20. ID_bird (Intercept) 0.06609 0.2571
  21. Number of obs: 1441, groups: ID_bird, 10
  22.  
  23. Fixed effects:
  24. Estimate Std. Error z value Pr(>|z|)
  25. (Intercept) 2.54474 0.17982 14.151 < 2e-16 ***
  26. Sub1:Topo_Shelf -1.36434 0.18114 -7.532 5.00e-14 ***
  27. Sub2:TopoShelf -0.96808 0.18090 -5.351 8.73e-08 ***
  28. Sub3:TopoShelf -1.08011 0.16919 -6.384 1.72e-10 ***
  29. Sub2:Topo_Shelf_break -0.88011 0.62247 -1.414 0.157393
  30. Sub3:Topo_Shelf_break -0.57702 0.23998 -2.404 0.016198 *
  31. Sub4:Topo_Slope -0.56675 0.16678 -3.398 0.000678 ***
  32. Sub1:Topo_Slope -1.23023 0.87412 -1.407 0.159308
  33. Sub2:Topo_Slope -0.76328 0.21249 -3.592 0.000328 ***
  34. Sub3:Topo_Slope -0.62372 0.16481 -3.785 0.000154 ***
  35. Sub5:Topo_Slope -0.58459 0.20093 -2.909 0.003620 **
  36. Sub4:Topo_Abyss -0.07263 0.26459 -0.275 0.783688
  37.  
  38. Mod4 <- glmer.nb(Nb_pt_nv ~ Substrate * Bathy_topo + (1|ID_bird), data=data)
  39.  
  40. Generalized linear mixed model fit by maximum likelihood (Laplace Approximation) ['glmerMod']
  41. Family: Negative Binomial(2.4986) ( log )
  42. Formula: Nb_fix ~ Bathy_topo * Substrate+ (1 | ID_bird)
  43. Data: F1_CB_all
  44.  
  45. AIC BIC logLik deviance df.resid
  46. 7926.9 8000.7 -3949.4 7898.9 1427
  47.  
  48. Scaled residuals:
  49. Min 1Q Median 3Q Max
  50. -1.2629 -0.7275 -0.2739 0.3640 7.4995
  51.  
  52. Random effects:
  53. Groups Name Variance Std.Dev.
  54. ID_bird (Intercept) 0.06609 0.2571
  55. Number of obs: 1441, groups: ID_bird, 10
  56.  
  57. Fixed effects:
  58. Estimate Std. Error z value Pr(>|z|)
  59. (Intercept) 1.52160 0.10993 13.841 < 2e-16 ***
  60. Topo_Shelf_break 0.50309 0.18218 2.762 0.00575 **
  61. Topo_Slope 0.45639 0.05822 7.839 4.53e-15 ***
  62. Topo_Abyss 0.95051 0.23844 3.986 6.71e-05 ***
  63. Sub1 -0.34120 0.11644 -2.930 0.00339 **
  64. Sub2 0.05506 0.10928 0.504 0.61439
  65. Sub3 -0.05697 0.05676 -1.004 0.31555
  66. Sub5 0.07263 0.26456 0.275 0.78367
  67. Topo_Slope:Sub1 -0.32229 0.86530 -0.372 0.70955
  68. Topo_Shelf_break:Sub2 -0.41511 0.64224 -0.646 0.51805
  69. Topo_Slope:Sub2 -0.25159 0.17062 -1.475 0.14033
  70. Topo_Slope:Sub5 -0.09048 0.29375 -0.308 0.75808
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