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  1. 2019-06-24 06:50:16,522 INFO - Preparing to run TaskInstance <TaskInstance: sigmagiik/projects/torchgeometric_pointnet2/9 (id: fSUWZhyt4UfeRcGeuKty2m)
  2. 2019-06-24 06:50:16,553 INFO - Starting attempt 1
  3. 2019-06-24 06:50:16,568 INFO - Downloading and setting up data sources
  4. 2019-06-24 06:50:16,859 INFO - Using Docker image: floydhub/pytorch:1.0.1-gpu.cuda9cudnn7-py3.42
  5. 2019-06-24 06:50:17,074 INFO - Starting container...
  6. 2019-06-24 06:50:17,661 INFO -
  7. ################################################################################
  8.  
  9. 2019-06-24 06:50:17,661 INFO - Run Output:
  10. 2019-06-24 06:50:18,303 INFO - Collecting torch-scatter (from -r floyd_requirements.txt (line 1))
  11. 2019-06-24 06:50:18,521 INFO - Downloading https://files.pythonhosted.org/packages/07/c0/f7ac424496f4a3bcb31aa993fba29077a6d42fc2624c66e90b58a566a98e/torch_scatter-1.2.0.tar.gz
  12. 2019-06-24 06:50:20,974 INFO - Collecting torch-sparse (from -r floyd_requirements.txt (line 2))
  13. 2019-06-24 06:50:21,070 INFO - Downloading https://files.pythonhosted.org/packages/b0/0a/2ff678e0d04e524dd2cf990a6202ced8c0ffe3fe6b08e02f25cc9fd27da0/torch_sparse-0.4.0.tar.gz
  14. 2019-06-24 06:50:22,712 INFO - Collecting torch-cluster (from -r floyd_requirements.txt (line 3))
  15. 2019-06-24 06:50:22,810 INFO - Downloading https://files.pythonhosted.org/packages/33/38/60ad2fcb735123429b3e0b165a19c80c6273d679b01d6550782abcb314e2/torch_cluster-1.4.2.tar.gz (712kB)
  16. 2019-06-24 06:50:24,561 INFO - Collecting torch-spline-conv (from -r floyd_requirements.txt (line 4))
  17. 2019-06-24 06:50:24,657 INFO - Downloading https://files.pythonhosted.org/packages/3c/dd/daa9d0b7b2ede913e573876ae286a58ec296678858f2814ff6d6789b234f/torch_spline_conv-1.1.0.tar.gz
  18. 2019-06-24 06:50:26,359 INFO - Collecting torch-geometric (from -r floyd_requirements.txt (line 5))
  19. 2019-06-24 06:50:26,457 INFO - Downloading https://files.pythonhosted.org/packages/bf/42/26de98dd839eea5a720269c3bf02a552322b4297064e0cd4c8b33cf5f780/torch_geometric-1.2.1.tar.gz (95kB)
  20. 2019-06-24 06:50:27,559 INFO - Requirement already satisfied: scipy in /usr/local/lib/python3.6/site-packages (from torch-sparse->-r floyd_requirements.txt (line 2)) (1.2.0)
  21. 2019-06-24 06:50:27,563 INFO - Requirement already satisfied: numpy in /usr/local/lib/python3.6/site-packages (from torch-geometric->-r floyd_requirements.txt (line 5)) (1.15.4)
  22. 2019-06-24 06:50:27,565 INFO - Requirement already satisfied: networkx in /usr/local/lib/python3.6/site-packages (from torch-geometric->-r floyd_requirements.txt (line 5)) (2.3)
  23. 2019-06-24 06:50:27,575 INFO - Requirement already satisfied: scikit-learn in /usr/local/lib/python3.6/site-packages (from torch-geometric->-r floyd_requirements.txt (line 5)) (0.20.2)
  24. 2019-06-24 06:50:27,627 INFO - Collecting plyfile (from torch-geometric->-r floyd_requirements.txt (line 5))
  25. 2019-06-24 06:50:27,653 INFO - Downloading https://files.pythonhosted.org/packages/9b/82/d4069cbb49954d44087c37ff616cb423d3e2c0dd276378cdb4af3e3ef2ee/plyfile-0.7.tar.gz
  26. 2019-06-24 06:50:28,069 INFO - Requirement already satisfied: pandas in /usr/local/lib/python3.6/site-packages (from torch-geometric->-r floyd_requirements.txt (line 5)) (0.23.4)
  27. 2019-06-24 06:50:28,119 INFO - Collecting rdflib (from torch-geometric->-r floyd_requirements.txt (line 5))
  28. 2019-06-24 06:50:28,231 INFO - Downloading https://files.pythonhosted.org/packages/3c/fe/630bacb652680f6d481b9febbb3e2c3869194a1a5fc3401a4a41195a2f8f/rdflib-4.2.2-py3-none-any.whl (344kB)
  29. 2019-06-24 06:50:28,327 INFO - Requirement already satisfied: h5py in /usr/local/lib/python3.6/site-packages (from torch-geometric->-r floyd_requirements.txt (line 5)) (2.9.0)
  30. 2019-06-24 06:50:28,331 INFO - Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python3.6/site-packages (from networkx->torch-geometric->-r floyd_requirements.txt (line 5)) (4.3.0)
  31. 2019-06-24 06:50:28,333 INFO - Requirement already satisfied: pytz>=2011k in /usr/local/lib/python3.6/site-packages (from pandas->torch-geometric->-r floyd_requirements.txt (line 5)) (2018.7)
  32. 2019-06-24 06:50:28,337 INFO - Requirement already satisfied: python-dateutil>=2.5.0 in /usr/local/lib/python3.6/site-packages (from pandas->torch-geometric->-r floyd_requirements.txt (line 5)) (2.7.5)
  33. 2019-06-24 06:50:28,384 INFO - Collecting isodate (from rdflib->torch-geometric->-r floyd_requirements.txt (line 5))
  34. 2019-06-24 06:50:28,412 INFO - Downloading https://files.pythonhosted.org/packages/9b/9f/b36f7774ff5ea8e428fdcfc4bb332c39ee5b9362ddd3d40d9516a55221b2/isodate-0.6.0-py2.py3-none-any.whl (45kB)
  35. 2019-06-24 06:50:28,468 INFO - Requirement already satisfied: pyparsing in /usr/local/lib/python3.6/site-packages (from rdflib->torch-geometric->-r floyd_requirements.txt (line 5)) (2.3.0)
  36. 2019-06-24 06:50:28,470 INFO - Requirement already satisfied: six in /usr/local/lib/python3.6/site-packages (from h5py->torch-geometric->-r floyd_requirements.txt (line 5)) (1.12.0)
  37. 2019-06-24 06:50:28,472 INFO - Building wheels for collected packages: torch-scatter, torch-sparse, torch-cluster, torch-spline-conv, torch-geometric, plyfile
  38. 2019-06-24 06:50:28,473 INFO - Running setup.py bdist_wheel for torch-scatter: started
  39. 2019-06-24 06:50:44,649 INFO - Running setup.py bdist_wheel for torch-scatter: finished with status 'error'
  40. 2019-06-24 06:50:44,649 INFO - Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-v69lnze5/torch-scatter/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-s5mshaqm --python-tag cp36:
  41. 2019-06-24 06:50:44,651 INFO - running bdist_wheel
  42. 2019-06-24 06:50:44,651 INFO - running build
  43. 2019-06-24 06:50:44,651 INFO - running build_py
  44. 2019-06-24 06:50:44,652 INFO - creating build
  45. 2019-06-24 06:50:44,652 INFO - creating build/lib.linux-x86_64-3.6
  46. 2019-06-24 06:50:44,652 INFO - creating build/lib.linux-x86_64-3.6/test
  47. 2019-06-24 06:50:44,652 INFO - copying test/test_backward.py -> build/lib.linux-x86_64-3.6/test
  48. 2019-06-24 06:50:44,652 INFO - copying test/test_multi_gpu.py -> build/lib.linux-x86_64-3.6/test
  49. 2019-06-24 06:50:44,653 INFO - copying test/test_std.py -> build/lib.linux-x86_64-3.6/test
  50. 2019-06-24 06:50:44,653 INFO - copying test/__init__.py -> build/lib.linux-x86_64-3.6/test
  51. 2019-06-24 06:50:44,653 INFO - copying test/utils.py -> build/lib.linux-x86_64-3.6/test
  52. 2019-06-24 06:50:44,653 INFO - copying test/test_forward.py -> build/lib.linux-x86_64-3.6/test
  53. 2019-06-24 06:50:44,653 INFO - creating build/lib.linux-x86_64-3.6/torch_scatter
  54. 2019-06-24 06:50:44,654 INFO - copying torch_scatter/mul.py -> build/lib.linux-x86_64-3.6/torch_scatter
  55. 2019-06-24 06:50:44,654 INFO - copying torch_scatter/max.py -> build/lib.linux-x86_64-3.6/torch_scatter
  56. 2019-06-24 06:50:44,654 INFO - copying torch_scatter/add.py -> build/lib.linux-x86_64-3.6/torch_scatter
  57. 2019-06-24 06:50:44,654 INFO - copying torch_scatter/min.py -> build/lib.linux-x86_64-3.6/torch_scatter
  58. 2019-06-24 06:50:44,655 INFO - copying torch_scatter/mean.py -> build/lib.linux-x86_64-3.6/torch_scatter
  59. 2019-06-24 06:50:44,655 INFO - copying torch_scatter/sub.py -> build/lib.linux-x86_64-3.6/torch_scatter
  60. 2019-06-24 06:50:44,655 INFO - copying torch_scatter/std.py -> build/lib.linux-x86_64-3.6/torch_scatter
  61. 2019-06-24 06:50:44,655 INFO - copying torch_scatter/__init__.py -> build/lib.linux-x86_64-3.6/torch_scatter
  62. 2019-06-24 06:50:44,655 INFO - copying torch_scatter/div.py -> build/lib.linux-x86_64-3.6/torch_scatter
  63. 2019-06-24 06:50:44,656 INFO - creating build/lib.linux-x86_64-3.6/torch_scatter/utils
  64. 2019-06-24 06:50:44,656 INFO - copying torch_scatter/utils/ext.py -> build/lib.linux-x86_64-3.6/torch_scatter/utils
  65. 2019-06-24 06:50:44,656 INFO - copying torch_scatter/utils/gen.py -> build/lib.linux-x86_64-3.6/torch_scatter/utils
  66. 2019-06-24 06:50:44,656 INFO - copying torch_scatter/utils/__init__.py -> build/lib.linux-x86_64-3.6/torch_scatter/utils
  67. 2019-06-24 06:50:44,657 INFO - running build_ext
  68. 2019-06-24 06:50:44,657 INFO - building 'torch_scatter.scatter_cpu' extension
  69. 2019-06-24 06:50:44,657 INFO - creating build/temp.linux-x86_64-3.6
  70. 2019-06-24 06:50:44,657 INFO - creating build/temp.linux-x86_64-3.6/cpu
  71. 2019-06-24 06:50:44,657 INFO - gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/lib/python3.6/site-packages/torch/lib/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/TH -I/usr/local/lib/python3.6/site-packages/torch/lib/include/THC -I/usr/local/include/python3.6m -c cpu/scatter.cpp -o build/temp.linux-x86_64-3.6/cpu/scatter.o -Wno-unused-variable -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
  72. 2019-06-24 06:50:44,658 INFO - cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
  73. 2019-06-24 06:50:44,658 INFO - In file included from /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/ATen.h:9:0,
  74. 2019-06-24 06:50:44,658 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/types.h:3,
  75. 2019-06-24 06:50:44,658 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
  76. 2019-06-24 06:50:44,659 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader.h:3,
  77. 2019-06-24 06:50:44,659 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data.h:3,
  78. 2019-06-24 06:50:44,659 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/all.h:4,
  79. 2019-06-24 06:50:44,659 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/extension.h:4,
  80. 2019-06-24 06:50:44,660 INFO - from cpu/scatter.cpp:1:
  81. 2019-06-24 06:50:44,660 INFO - cpu/scatter.cpp: In lambda function:
  82. 2019-06-24 06:50:44,660 INFO - cpu/scatter.cpp:8:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  83. 2019-06-24 06:50:44,660 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_mul", [&] {
  84. 2019-06-24 06:50:44,660 INFO - ^
  85. 2019-06-24 06:50:44,661 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  86. 2019-06-24 06:50:44,661 INFO - const at::Type& the_type = TYPE; \
  87. 2019-06-24 06:50:44,661 INFO - ^
  88. 2019-06-24 06:50:44,661 INFO - cpu/scatter.cpp: In lambda function:
  89. 2019-06-24 06:50:44,662 INFO - cpu/scatter.cpp:21:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  90. 2019-06-24 06:50:44,662 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_div", [&] {
  91. 2019-06-24 06:50:44,662 INFO - ^
  92. 2019-06-24 06:50:44,662 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  93. 2019-06-24 06:50:44,663 INFO - const at::Type& the_type = TYPE; \
  94. 2019-06-24 06:50:44,663 INFO - ^
  95. 2019-06-24 06:50:44,663 INFO - cpu/scatter.cpp: In lambda function:
  96. 2019-06-24 06:50:44,663 INFO - cpu/scatter.cpp:34:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  97. 2019-06-24 06:50:44,663 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_max", [&] {
  98. 2019-06-24 06:50:44,664 INFO - ^
  99. 2019-06-24 06:50:44,664 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  100. 2019-06-24 06:50:44,664 INFO - const at::Type& the_type = TYPE; \
  101. 2019-06-24 06:50:44,664 INFO - ^
  102. 2019-06-24 06:50:44,665 INFO - cpu/scatter.cpp: In lambda function:
  103. 2019-06-24 06:50:44,665 INFO - cpu/scatter.cpp:51:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  104. 2019-06-24 06:50:44,665 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_min", [&] {
  105. 2019-06-24 06:50:44,665 INFO - ^
  106. 2019-06-24 06:50:44,666 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  107. 2019-06-24 06:50:44,666 INFO - const at::Type& the_type = TYPE; \
  108. 2019-06-24 06:50:44,666 INFO - ^
  109. 2019-06-24 06:50:44,666 INFO - cpu/scatter.cpp: In lambda function:
  110. 2019-06-24 06:50:44,666 INFO - cpu/scatter.cpp:68:41: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  111. 2019-06-24 06:50:44,667 INFO - AT_DISPATCH_ALL_TYPES(grad.scalar_type(), "index_backward", [&] {
  112. 2019-06-24 06:50:44,667 INFO - ^
  113. 2019-06-24 06:50:44,667 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  114. 2019-06-24 06:50:44,667 INFO - const at::Type& the_type = TYPE; \
  115. 2019-06-24 06:50:44,668 INFO - ^
  116. 2019-06-24 06:50:44,668 INFO - error: command 'gcc' failed with exit status 1
  117. 2019-06-24 06:50:44,668 INFO -
  118. 2019-06-24 06:50:44,668 INFO - ----------------------------------------
  119. 2019-06-24 06:50:44,669 INFO - Running setup.py clean for torch-scatter
  120. 2019-06-24 06:50:44,669 INFO - Failed building wheel for torch-scatter
  121. 2019-06-24 06:50:45,881 INFO - Running setup.py bdist_wheel for torch-sparse: started
  122. 2019-06-24 06:50:53,144 INFO - Running setup.py bdist_wheel for torch-sparse: finished with status 'error'
  123. 2019-06-24 06:50:53,145 INFO - Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-v69lnze5/torch-sparse/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-63d96otg --python-tag cp36:
  124. 2019-06-24 06:50:53,145 INFO - running bdist_wheel
  125. 2019-06-24 06:50:53,146 INFO - running build
  126. 2019-06-24 06:50:53,146 INFO - running build_py
  127. 2019-06-24 06:50:53,146 INFO - creating build
  128. 2019-06-24 06:50:53,146 INFO - creating build/lib.linux-x86_64-3.6
  129. 2019-06-24 06:50:53,146 INFO - creating build/lib.linux-x86_64-3.6/test
  130. 2019-06-24 06:50:53,147 INFO - copying test/test_spspmm.py -> build/lib.linux-x86_64-3.6/test
  131. 2019-06-24 06:50:53,147 INFO - copying test/test_spmm.py -> build/lib.linux-x86_64-3.6/test
  132. 2019-06-24 06:50:53,147 INFO - copying test/test_convert.py -> build/lib.linux-x86_64-3.6/test
  133. 2019-06-24 06:50:53,147 INFO - copying test/test_coalesce.py -> build/lib.linux-x86_64-3.6/test
  134. 2019-06-24 06:50:53,147 INFO - copying test/test_transpose.py -> build/lib.linux-x86_64-3.6/test
  135. 2019-06-24 06:50:53,147 INFO - copying test/__init__.py -> build/lib.linux-x86_64-3.6/test
  136. 2019-06-24 06:50:53,147 INFO - copying test/test_eye.py -> build/lib.linux-x86_64-3.6/test
  137. 2019-06-24 06:50:53,147 INFO - copying test/test_spspmm_spmm.py -> build/lib.linux-x86_64-3.6/test
  138. 2019-06-24 06:50:53,148 INFO - copying test/utils.py -> build/lib.linux-x86_64-3.6/test
  139. 2019-06-24 06:50:53,148 INFO - creating build/lib.linux-x86_64-3.6/torch_sparse
  140. 2019-06-24 06:50:53,148 INFO - copying torch_sparse/eye.py -> build/lib.linux-x86_64-3.6/torch_sparse
  141. 2019-06-24 06:50:53,148 INFO - copying torch_sparse/transpose.py -> build/lib.linux-x86_64-3.6/torch_sparse
  142. 2019-06-24 06:50:53,148 INFO - copying torch_sparse/spspmm.py -> build/lib.linux-x86_64-3.6/torch_sparse
  143. 2019-06-24 06:50:53,148 INFO - copying torch_sparse/convert.py -> build/lib.linux-x86_64-3.6/torch_sparse
  144. 2019-06-24 06:50:53,148 INFO - copying torch_sparse/coalesce.py -> build/lib.linux-x86_64-3.6/torch_sparse
  145. 2019-06-24 06:50:53,148 INFO - copying torch_sparse/spmm.py -> build/lib.linux-x86_64-3.6/torch_sparse
  146. 2019-06-24 06:50:53,149 INFO - copying torch_sparse/__init__.py -> build/lib.linux-x86_64-3.6/torch_sparse
  147. 2019-06-24 06:50:53,149 INFO - creating build/lib.linux-x86_64-3.6/torch_sparse/utils
  148. 2019-06-24 06:50:53,149 INFO - copying torch_sparse/utils/unique.py -> build/lib.linux-x86_64-3.6/torch_sparse/utils
  149. 2019-06-24 06:50:53,149 INFO - copying torch_sparse/utils/__init__.py -> build/lib.linux-x86_64-3.6/torch_sparse/utils
  150. 2019-06-24 06:50:53,149 INFO - running build_ext
  151. 2019-06-24 06:50:53,149 INFO - building 'torch_sparse.spspmm_cpu' extension
  152. 2019-06-24 06:50:53,149 INFO - creating build/temp.linux-x86_64-3.6
  153. 2019-06-24 06:50:53,150 INFO - creating build/temp.linux-x86_64-3.6/cpu
  154. 2019-06-24 06:50:53,150 INFO - gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/lib/python3.6/site-packages/torch/lib/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/TH -I/usr/local/lib/python3.6/site-packages/torch/lib/include/THC -I/usr/local/include/python3.6m -c cpu/spspmm.cpp -o build/temp.linux-x86_64-3.6/cpu/spspmm.o -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=spspmm_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
  155. 2019-06-24 06:50:53,150 INFO - cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
  156. 2019-06-24 06:50:53,150 INFO - In file included from /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/ATen.h:9:0,
  157. 2019-06-24 06:50:53,150 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/types.h:3,
  158. 2019-06-24 06:50:53,150 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
  159. 2019-06-24 06:50:53,150 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader.h:3,
  160. 2019-06-24 06:50:53,150 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data.h:3,
  161. 2019-06-24 06:50:53,151 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/all.h:4,
  162. 2019-06-24 06:50:53,151 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/extension.h:4,
  163. 2019-06-24 06:50:53,151 INFO - from cpu/spspmm.cpp:1:
  164. 2019-06-24 06:50:53,151 INFO - cpu/spspmm.cpp: In lambda function:
  165. 2019-06-24 06:50:53,151 INFO - cpu/spspmm.cpp:34:48: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  166. 2019-06-24 06:50:53,151 INFO - AT_DISPATCH_FLOATING_TYPES(valueA.scalar_type(), "spspmm_bw", [&] {
  167. 2019-06-24 06:50:53,151 INFO - ^
  168. 2019-06-24 06:50:53,152 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  169. 2019-06-24 06:50:53,152 INFO - const at::Type& the_type = TYPE; \
  170. 2019-06-24 06:50:53,152 INFO - ^
  171. 2019-06-24 06:50:53,152 INFO - error: command 'gcc' failed with exit status 1
  172. 2019-06-24 06:50:53,152 INFO -
  173. 2019-06-24 06:50:53,152 INFO - ----------------------------------------
  174. 2019-06-24 06:50:53,152 INFO - Running setup.py clean for torch-sparse
  175. 2019-06-24 06:50:53,152 INFO - Failed building wheel for torch-sparse
  176. 2019-06-24 06:50:54,372 INFO - Running setup.py bdist_wheel for torch-cluster: started
  177. 2019-06-24 06:51:01,545 INFO - Running setup.py bdist_wheel for torch-cluster: finished with status 'error'
  178. 2019-06-24 06:51:01,546 INFO - Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-v69lnze5/torch-cluster/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-oqzqrt6b --python-tag cp36:
  179. 2019-06-24 06:51:01,546 INFO - running bdist_wheel
  180. 2019-06-24 06:51:01,546 INFO - running build
  181. 2019-06-24 06:51:01,547 INFO - running build_py
  182. 2019-06-24 06:51:01,547 INFO - creating build
  183. 2019-06-24 06:51:01,547 INFO - creating build/lib.linux-x86_64-3.6
  184. 2019-06-24 06:51:01,547 INFO - creating build/lib.linux-x86_64-3.6/test
  185. 2019-06-24 06:51:01,547 INFO - copying test/test_radius.py -> build/lib.linux-x86_64-3.6/test
  186. 2019-06-24 06:51:01,547 INFO - Failed building wheel for torch-cluster
  187. 2019-06-24 06:51:01,548 INFO - copying test/test_rw.py -> build/lib.linux-x86_64-3.6/test
  188. 2019-06-24 06:51:01,548 INFO - copying test/test_grid.py -> build/lib.linux-x86_64-3.6/test
  189. 2019-06-24 06:51:01,548 INFO - copying test/test_knn.py -> build/lib.linux-x86_64-3.6/test
  190. 2019-06-24 06:51:01,548 INFO - copying test/test_fps.py -> build/lib.linux-x86_64-3.6/test
  191. 2019-06-24 06:51:01,548 INFO - copying test/test_graclus.py -> build/lib.linux-x86_64-3.6/test
  192. 2019-06-24 06:51:01,548 INFO - copying test/__init__.py -> build/lib.linux-x86_64-3.6/test
  193. 2019-06-24 06:51:01,548 INFO - copying test/utils.py -> build/lib.linux-x86_64-3.6/test
  194. 2019-06-24 06:51:01,548 INFO - copying test/test_nearest.py -> build/lib.linux-x86_64-3.6/test
  195. 2019-06-24 06:51:01,548 INFO - copying test/test_sampler.py -> build/lib.linux-x86_64-3.6/test
  196. 2019-06-24 06:51:01,549 INFO - creating build/lib.linux-x86_64-3.6/torch_cluster
  197. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/nearest.py -> build/lib.linux-x86_64-3.6/torch_cluster
  198. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/fps.py -> build/lib.linux-x86_64-3.6/torch_cluster
  199. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/radius.py -> build/lib.linux-x86_64-3.6/torch_cluster
  200. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/knn.py -> build/lib.linux-x86_64-3.6/torch_cluster
  201. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/grid.py -> build/lib.linux-x86_64-3.6/torch_cluster
  202. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/graclus.py -> build/lib.linux-x86_64-3.6/torch_cluster
  203. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/rw.py -> build/lib.linux-x86_64-3.6/torch_cluster
  204. 2019-06-24 06:51:01,549 INFO - copying torch_cluster/sampler.py -> build/lib.linux-x86_64-3.6/torch_cluster
  205. 2019-06-24 06:51:01,550 INFO - copying torch_cluster/__init__.py -> build/lib.linux-x86_64-3.6/torch_cluster
  206. 2019-06-24 06:51:01,550 INFO - running build_ext
  207. 2019-06-24 06:51:01,550 INFO - building 'torch_cluster.graclus_cpu' extension
  208. 2019-06-24 06:51:01,550 INFO - creating build/temp.linux-x86_64-3.6
  209. 2019-06-24 06:51:01,550 INFO - creating build/temp.linux-x86_64-3.6/cpu
  210. 2019-06-24 06:51:01,550 INFO - gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/lib/python3.6/site-packages/torch/lib/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/TH -I/usr/local/lib/python3.6/site-packages/torch/lib/include/THC -I/usr/local/include/python3.6m -c cpu/graclus.cpp -o build/temp.linux-x86_64-3.6/cpu/graclus.o -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=graclus_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
  211. 2019-06-24 06:51:01,550 INFO - cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
  212. 2019-06-24 06:51:01,550 INFO - In file included from /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/ATen.h:9:0,
  213. 2019-06-24 06:51:01,550 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/types.h:3,
  214. 2019-06-24 06:51:01,551 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
  215. 2019-06-24 06:51:01,551 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader.h:3,
  216. 2019-06-24 06:51:01,551 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data.h:3,
  217. 2019-06-24 06:51:01,551 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/all.h:4,
  218. 2019-06-24 06:51:01,551 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/extension.h:4,
  219. 2019-06-24 06:51:01,551 INFO - from cpu/graclus.cpp:1:
  220. 2019-06-24 06:51:01,551 INFO - cpu/graclus.cpp: In lambda function:
  221. 2019-06-24 06:51:01,551 INFO - cpu/graclus.cpp:52:43: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  222. 2019-06-24 06:51:01,552 INFO - AT_DISPATCH_ALL_TYPES(weight.scalar_type(), "weighted_graclus", [&] {
  223. 2019-06-24 06:51:01,552 INFO - ^
  224. 2019-06-24 06:51:01,552 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  225. 2019-06-24 06:51:01,552 INFO - const at::Type& the_type = TYPE; \
  226. 2019-06-24 06:51:01,552 INFO - ^
  227. 2019-06-24 06:51:01,552 INFO - error: command 'gcc' failed with exit status 1
  228. 2019-06-24 06:51:01,552 INFO -
  229. 2019-06-24 06:51:01,552 INFO - ----------------------------------------
  230. 2019-06-24 06:51:01,552 INFO - Running setup.py clean for torch-cluster
  231. 2019-06-24 06:51:02,763 INFO - Running setup.py bdist_wheel for torch-spline-conv: started
  232. 2019-06-24 06:51:10,033 INFO - Running setup.py bdist_wheel for torch-spline-conv: finished with status 'error'
  233. 2019-06-24 06:51:10,033 INFO - Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-v69lnze5/torch-spline-conv/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /tmp/pip-wheel-cwvvia28 --python-tag cp36:
  234. 2019-06-24 06:51:10,034 INFO - running bdist_wheel
  235. 2019-06-24 06:51:10,034 INFO - running build
  236. 2019-06-24 06:51:10,034 INFO - running build_py
  237. 2019-06-24 06:51:10,034 INFO - creating build
  238. 2019-06-24 06:51:10,035 INFO - creating build/lib.linux-x86_64-3.6
  239. 2019-06-24 06:51:10,035 INFO - creating build/lib.linux-x86_64-3.6/test
  240. 2019-06-24 06:51:10,035 INFO - copying test/test_conv.py -> build/lib.linux-x86_64-3.6/test
  241. 2019-06-24 06:51:10,035 INFO - copying test/test_basis.py -> build/lib.linux-x86_64-3.6/test
  242. 2019-06-24 06:51:10,035 INFO - copying test/__init__.py -> build/lib.linux-x86_64-3.6/test
  243. 2019-06-24 06:51:10,036 INFO - copying test/test_weighting.py -> build/lib.linux-x86_64-3.6/test
  244. 2019-06-24 06:51:10,036 INFO - copying test/utils.py -> build/lib.linux-x86_64-3.6/test
  245. 2019-06-24 06:51:10,036 INFO - creating build/lib.linux-x86_64-3.6/torch_spline_conv
  246. 2019-06-24 06:51:10,036 INFO - copying torch_spline_conv/basis.py -> build/lib.linux-x86_64-3.6/torch_spline_conv
  247. 2019-06-24 06:51:10,036 INFO - copying torch_spline_conv/weighting.py -> build/lib.linux-x86_64-3.6/torch_spline_conv
  248. 2019-06-24 06:51:10,037 INFO - copying torch_spline_conv/__init__.py -> build/lib.linux-x86_64-3.6/torch_spline_conv
  249. 2019-06-24 06:51:10,037 INFO - copying torch_spline_conv/conv.py -> build/lib.linux-x86_64-3.6/torch_spline_conv
  250. 2019-06-24 06:51:10,037 INFO - creating build/lib.linux-x86_64-3.6/torch_spline_conv/utils
  251. 2019-06-24 06:51:10,037 INFO - copying torch_spline_conv/utils/degree.py -> build/lib.linux-x86_64-3.6/torch_spline_conv/utils
  252. 2019-06-24 06:51:10,037 INFO - copying torch_spline_conv/utils/__init__.py -> build/lib.linux-x86_64-3.6/torch_spline_conv/utils
  253. 2019-06-24 06:51:10,037 INFO - running build_ext
  254. 2019-06-24 06:51:10,038 INFO - building 'torch_spline_conv.basis_cpu' extension
  255. 2019-06-24 06:51:10,038 INFO - creating build/temp.linux-x86_64-3.6
  256. 2019-06-24 06:51:10,038 INFO - creating build/temp.linux-x86_64-3.6/cpu
  257. 2019-06-24 06:51:10,038 INFO - gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/lib/python3.6/site-packages/torch/lib/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/TH -I/usr/local/lib/python3.6/site-packages/torch/lib/include/THC -I/usr/local/include/python3.6m -c cpu/basis.cpp -o build/temp.linux-x86_64-3.6/cpu/basis.o -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=basis_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
  258. 2019-06-24 06:51:10,039 INFO - cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
  259. 2019-06-24 06:51:10,039 INFO - In file included from /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/ATen.h:9:0,
  260. 2019-06-24 06:51:10,039 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/types.h:3,
  261. 2019-06-24 06:51:10,039 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
  262. 2019-06-24 06:51:10,039 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader.h:3,
  263. 2019-06-24 06:51:10,040 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data.h:3,
  264. 2019-06-24 06:51:10,040 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/all.h:4,
  265. 2019-06-24 06:51:10,040 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/extension.h:4,
  266. 2019-06-24 06:51:10,040 INFO - from cpu/basis.cpp:1:
  267. 2019-06-24 06:51:10,041 INFO - cpu/basis.cpp: In lambda function:
  268. 2019-06-24 06:51:10,041 INFO - cpu/basis.cpp:36:27: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  269. 2019-06-24 06:51:10,041 INFO - PSEUDO.scalar_type(), "basis_forward_##M", [&] { \
  270. 2019-06-24 06:51:10,041 INFO - ^
  271. 2019-06-24 06:51:10,041 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  272. 2019-06-24 06:51:10,042 INFO - const at::Type& the_type = TYPE; \
  273. 2019-06-24 06:51:10,042 INFO - ^
  274. 2019-06-24 06:51:10,042 INFO - cpu/basis.cpp:79:10: note: in expansion of macro ‘BASIS_FORWARD’
  275. 2019-06-24 06:51:10,042 INFO - return BASIS_FORWARD(1, pseudo, kernel_size, is_open_spline, linear);
  276. 2019-06-24 06:51:10,042 INFO - ^
  277. 2019-06-24 06:51:10,043 INFO - cpu/basis.cpp: In lambda function:
  278. 2019-06-24 06:51:10,043 INFO - cpu/basis.cpp:36:27: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  279. 2019-06-24 06:51:10,043 INFO - PSEUDO.scalar_type(), "basis_forward_##M", [&] { \
  280. 2019-06-24 06:51:10,043 INFO - ^
  281. 2019-06-24 06:51:10,044 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  282. 2019-06-24 06:51:10,044 INFO - const at::Type& the_type = TYPE; \
  283. 2019-06-24 06:51:10,044 INFO - ^
  284. 2019-06-24 06:51:10,044 INFO - cpu/basis.cpp:85:10: note: in expansion of macro ‘BASIS_FORWARD’
  285. 2019-06-24 06:51:10,044 INFO - return BASIS_FORWARD(2, pseudo, kernel_size, is_open_spline, quadratic);
  286. 2019-06-24 06:51:10,045 INFO - ^
  287. 2019-06-24 06:51:10,045 INFO - cpu/basis.cpp: In lambda function:
  288. 2019-06-24 06:51:10,045 INFO - cpu/basis.cpp:36:27: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  289. 2019-06-24 06:51:10,045 INFO - PSEUDO.scalar_type(), "basis_forward_##M", [&] { \
  290. 2019-06-24 06:51:10,045 INFO - ^
  291. 2019-06-24 06:51:10,046 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  292. 2019-06-24 06:51:10,046 INFO - const at::Type& the_type = TYPE; \
  293. 2019-06-24 06:51:10,046 INFO - ^
  294. 2019-06-24 06:51:10,046 INFO - cpu/basis.cpp:90:10: note: in expansion of macro ‘BASIS_FORWARD’
  295. 2019-06-24 06:51:10,047 INFO - return BASIS_FORWARD(3, pseudo, kernel_size, is_open_spline, cubic);
  296. 2019-06-24 06:51:10,047 INFO - ^
  297. 2019-06-24 06:51:10,047 INFO - cpu/basis.cpp: In lambda function:
  298. 2019-06-24 06:51:10,047 INFO - cpu/basis.cpp:128:27: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  299. 2019-06-24 06:51:10,047 INFO - PSEUDO.scalar_type(), "basis_backward_##M", [&] { \
  300. 2019-06-24 06:51:10,048 INFO - ^
  301. 2019-06-24 06:51:10,048 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  302. 2019-06-24 06:51:10,048 INFO - const at::Type& the_type = TYPE; \
  303. 2019-06-24 06:51:10,048 INFO - ^
  304. 2019-06-24 06:51:10,049 INFO - cpu/basis.cpp:173:10: note: in expansion of macro ‘BASIS_BACKWARD’
  305. 2019-06-24 06:51:10,049 INFO - return BASIS_BACKWARD(1, grad_basis, pseudo, kernel_size, is_open_spline,
  306. 2019-06-24 06:51:10,049 INFO - ^
  307. 2019-06-24 06:51:10,049 INFO - cpu/basis.cpp: In lambda function:
  308. 2019-06-24 06:51:10,049 INFO - cpu/basis.cpp:128:27: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  309. 2019-06-24 06:51:10,050 INFO - PSEUDO.scalar_type(), "basis_backward_##M", [&] { \
  310. 2019-06-24 06:51:10,050 INFO - ^
  311. 2019-06-24 06:51:10,050 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  312. 2019-06-24 06:51:10,050 INFO - const at::Type& the_type = TYPE; \
  313. 2019-06-24 06:51:10,051 INFO - ^
  314. 2019-06-24 06:51:10,051 INFO - cpu/basis.cpp:179:10: note: in expansion of macro ‘BASIS_BACKWARD’
  315. 2019-06-24 06:51:10,051 INFO - return BASIS_BACKWARD(2, grad_basis, pseudo, kernel_size, is_open_spline,
  316. 2019-06-24 06:51:10,051 INFO - ^
  317. 2019-06-24 06:51:10,052 INFO - cpu/basis.cpp: In lambda function:
  318. 2019-06-24 06:51:10,052 INFO - cpu/basis.cpp:128:27: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  319. 2019-06-24 06:51:10,052 INFO - PSEUDO.scalar_type(), "basis_backward_##M", [&] { \
  320. 2019-06-24 06:51:10,052 INFO - ^
  321. 2019-06-24 06:51:10,052 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:15:32: note: in definition of macro ‘AT_DISPATCH_FLOATING_TYPES’
  322. 2019-06-24 06:51:10,053 INFO - const at::Type& the_type = TYPE; \
  323. 2019-06-24 06:51:10,053 INFO - ^
  324. 2019-06-24 06:51:10,053 INFO - cpu/basis.cpp:185:10: note: in expansion of macro ‘BASIS_BACKWARD’
  325. 2019-06-24 06:51:10,053 INFO - return BASIS_BACKWARD(3, grad_basis, pseudo, kernel_size, is_open_spline,
  326. 2019-06-24 06:51:10,054 INFO - ^
  327. 2019-06-24 06:51:10,054 INFO - error: command 'gcc' failed with exit status 1
  328. 2019-06-24 06:51:10,054 INFO -
  329. 2019-06-24 06:51:10,054 INFO - ----------------------------------------
  330. 2019-06-24 06:51:10,055 INFO - Failed building wheel for torch-spline-conv
  331. 2019-06-24 06:51:10,055 INFO - Running setup.py clean for torch-spline-conv
  332. 2019-06-24 06:51:11,259 INFO - Running setup.py bdist_wheel for torch-geometric: started
  333. 2019-06-24 06:51:12,098 INFO - Running setup.py bdist_wheel for torch-geometric: finished with status 'done'
  334. 2019-06-24 06:51:12,099 INFO - Stored in directory: /root/.cache/pip/wheels/cc/52/03/4ffa09bfe63693035a218fd50b059a9ad0f1638d5d9a7a86f2
  335. 2019-06-24 06:51:12,144 INFO - Running setup.py bdist_wheel for plyfile: started
  336. 2019-06-24 06:51:12,560 INFO - Running setup.py bdist_wheel for plyfile: finished with status 'done'
  337. 2019-06-24 06:51:12,560 INFO - Stored in directory: /root/.cache/pip/wheels/91/3e/ee/e5630ef0fd53cedaa6e911ba27e8b40fff034388d1f264bb92
  338. 2019-06-24 06:51:12,564 INFO - Successfully built torch-geometric plyfile
  339. 2019-06-24 06:51:12,564 INFO - Failed to build torch-scatter torch-sparse torch-cluster torch-spline-conv
  340. 2019-06-24 06:51:13,912 INFO - menpo 0.8.1 has requirement matplotlib<2.0,>=1.4, but you'll have matplotlib 3.0.2 which is incompatible.
  341. 2019-06-24 06:51:13,912 INFO - menpo 0.8.1 has requirement pillow<5.0,>=3.0, but you'll have pillow 5.4.0 which is incompatible.
  342. 2019-06-24 06:51:13,912 INFO - menpo 0.8.1 has requirement scipy<1.0,>=0.16, but you'll have scipy 1.2.0 which is incompatible.
  343. 2019-06-24 06:51:13,913 INFO - Installing collected packages: torch-scatter, torch-sparse, torch-cluster, torch-spline-conv, plyfile, isodate, rdflib, torch-geometric
  344. 2019-06-24 06:51:13,913 INFO - Running setup.py install for torch-scatter: started
  345. 2019-06-24 06:51:21,079 INFO - Running setup.py install for torch-scatter: finished with status 'error'
  346. 2019-06-24 06:51:21,079 INFO - Complete output from command /usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-v69lnze5/torch-scatter/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-4qpi8saq/install-record.txt --single-version-externally-managed --compile:
  347. 2019-06-24 06:51:21,079 INFO - running install
  348. 2019-06-24 06:51:21,079 INFO - running build
  349. 2019-06-24 06:51:21,080 INFO - running build_py
  350. 2019-06-24 06:51:21,080 INFO - creating build
  351. 2019-06-24 06:51:21,080 INFO - creating build/lib.linux-x86_64-3.6
  352. 2019-06-24 06:51:21,080 INFO - creating build/lib.linux-x86_64-3.6/test
  353. 2019-06-24 06:51:21,080 INFO - copying test/test_backward.py -> build/lib.linux-x86_64-3.6/test
  354. 2019-06-24 06:51:21,080 INFO - copying test/test_multi_gpu.py -> build/lib.linux-x86_64-3.6/test
  355. 2019-06-24 06:51:21,080 INFO - copying test/test_std.py -> build/lib.linux-x86_64-3.6/test
  356. 2019-06-24 06:51:21,081 INFO - copying test/__init__.py -> build/lib.linux-x86_64-3.6/test
  357. 2019-06-24 06:51:21,081 INFO - copying test/utils.py -> build/lib.linux-x86_64-3.6/test
  358. 2019-06-24 06:51:21,081 INFO - copying test/test_forward.py -> build/lib.linux-x86_64-3.6/test
  359. 2019-06-24 06:51:21,081 INFO - creating build/lib.linux-x86_64-3.6/torch_scatter
  360. 2019-06-24 06:51:21,081 INFO - copying torch_scatter/mul.py -> build/lib.linux-x86_64-3.6/torch_scatter
  361. 2019-06-24 06:51:21,081 INFO - copying torch_scatter/max.py -> build/lib.linux-x86_64-3.6/torch_scatter
  362. 2019-06-24 06:51:21,081 INFO - copying torch_scatter/add.py -> build/lib.linux-x86_64-3.6/torch_scatter
  363. 2019-06-24 06:51:21,081 INFO - copying torch_scatter/min.py -> build/lib.linux-x86_64-3.6/torch_scatter
  364. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/mean.py -> build/lib.linux-x86_64-3.6/torch_scatter
  365. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/sub.py -> build/lib.linux-x86_64-3.6/torch_scatter
  366. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/std.py -> build/lib.linux-x86_64-3.6/torch_scatter
  367. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/__init__.py -> build/lib.linux-x86_64-3.6/torch_scatter
  368. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/div.py -> build/lib.linux-x86_64-3.6/torch_scatter
  369. 2019-06-24 06:51:21,082 INFO - creating build/lib.linux-x86_64-3.6/torch_scatter/utils
  370. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/utils/ext.py -> build/lib.linux-x86_64-3.6/torch_scatter/utils
  371. 2019-06-24 06:51:21,082 INFO - copying torch_scatter/utils/gen.py -> build/lib.linux-x86_64-3.6/torch_scatter/utils
  372. 2019-06-24 06:51:21,083 INFO - copying torch_scatter/utils/__init__.py -> build/lib.linux-x86_64-3.6/torch_scatter/utils
  373. 2019-06-24 06:51:21,083 INFO - running build_ext
  374. 2019-06-24 06:51:21,083 INFO - building 'torch_scatter.scatter_cpu' extension
  375. 2019-06-24 06:51:21,083 INFO - creating build/temp.linux-x86_64-3.6
  376. 2019-06-24 06:51:21,083 INFO - creating build/temp.linux-x86_64-3.6/cpu
  377. 2019-06-24 06:51:21,083 INFO - gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/lib/python3.6/site-packages/torch/lib/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include -I/usr/local/lib/python3.6/site-packages/torch/lib/include/TH -I/usr/local/lib/python3.6/site-packages/torch/lib/include/THC -I/usr/local/include/python3.6m -c cpu/scatter.cpp -o build/temp.linux-x86_64-3.6/cpu/scatter.o -Wno-unused-variable -DTORCH_API_INCLUDE_EXTENSION_H -DTORCH_EXTENSION_NAME=scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++11
  378. 2019-06-24 06:51:21,083 INFO - cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
  379. 2019-06-24 06:51:21,083 INFO - In file included from /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/ATen.h:9:0,
  380. 2019-06-24 06:51:21,084 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/types.h:3,
  381. 2019-06-24 06:51:21,084 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
  382. 2019-06-24 06:51:21,084 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data/dataloader.h:3,
  383. 2019-06-24 06:51:21,084 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/data.h:3,
  384. 2019-06-24 06:51:21,084 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/csrc/api/include/torch/all.h:4,
  385. 2019-06-24 06:51:21,084 INFO - from /usr/local/lib/python3.6/site-packages/torch/lib/include/torch/extension.h:4,
  386. 2019-06-24 06:51:21,084 INFO - from cpu/scatter.cpp:1:
  387. 2019-06-24 06:51:21,084 INFO - cpu/scatter.cpp: In lambda function:
  388. 2019-06-24 06:51:21,084 INFO - cpu/scatter.cpp:8:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  389. 2019-06-24 06:51:21,085 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_mul", [&] {
  390. 2019-06-24 06:51:21,085 INFO - ^
  391. 2019-06-24 06:51:21,085 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  392. 2019-06-24 06:51:21,085 INFO - const at::Type& the_type = TYPE; \
  393. 2019-06-24 06:51:21,085 INFO - ^
  394. 2019-06-24 06:51:21,085 INFO - cpu/scatter.cpp: In lambda function:
  395. 2019-06-24 06:51:21,085 INFO - cpu/scatter.cpp:21:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  396. 2019-06-24 06:51:21,085 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_div", [&] {
  397. 2019-06-24 06:51:21,085 INFO - ^
  398. 2019-06-24 06:51:21,086 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  399. 2019-06-24 06:51:21,086 INFO - const at::Type& the_type = TYPE; \
  400. 2019-06-24 06:51:21,086 INFO - ^
  401. 2019-06-24 06:51:21,086 INFO - cpu/scatter.cpp: In lambda function:
  402. 2019-06-24 06:51:21,086 INFO - cpu/scatter.cpp:34:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  403. 2019-06-24 06:51:21,086 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_max", [&] {
  404. 2019-06-24 06:51:21,086 INFO - ^
  405. 2019-06-24 06:51:21,087 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  406. 2019-06-24 06:51:21,087 INFO - const at::Type& the_type = TYPE; \
  407. 2019-06-24 06:51:21,087 INFO - ^
  408. 2019-06-24 06:51:21,087 INFO - cpu/scatter.cpp: In lambda function:
  409. 2019-06-24 06:51:21,087 INFO - cpu/scatter.cpp:51:40: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  410. 2019-06-24 06:51:21,087 INFO - AT_DISPATCH_ALL_TYPES(src.scalar_type(), "scatter_min", [&] {
  411. 2019-06-24 06:51:21,087 INFO - ^
  412. 2019-06-24 06:51:21,088 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  413. 2019-06-24 06:51:21,088 INFO - const at::Type& the_type = TYPE; \
  414. 2019-06-24 06:51:21,088 INFO - ^
  415. 2019-06-24 06:51:21,088 INFO - cpu/scatter.cpp: In lambda function:
  416. 2019-06-24 06:51:21,088 INFO - cpu/scatter.cpp:68:41: error: invalid initialization of reference of type ‘const at::Type&’ from expression of type ‘c10::ScalarType’
  417. 2019-06-24 06:51:21,088 INFO - AT_DISPATCH_ALL_TYPES(grad.scalar_type(), "index_backward", [&] {
  418. 2019-06-24 06:51:21,088 INFO - ^
  419. 2019-06-24 06:51:21,088 INFO - /usr/local/lib/python3.6/site-packages/torch/lib/include/ATen/Dispatch.h:70:32: note: in definition of macro ‘AT_DISPATCH_ALL_TYPES’
  420. 2019-06-24 06:51:21,089 INFO - const at::Type& the_type = TYPE; \
  421. 2019-06-24 06:51:21,089 INFO - ^
  422. 2019-06-24 06:51:21,089 INFO - error: command 'gcc' failed with exit status 1
  423. 2019-06-24 06:51:21,089 INFO -
  424. 2019-06-24 06:51:21,089 INFO - ----------------------------------------
  425. 2019-06-24 06:51:21,105 INFO - Command "/usr/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-v69lnze5/torch-scatter/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-4qpi8saq/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-install-v69lnze5/torch-scatter/
  426. 2019-06-24 06:51:21,268 INFO - You are using pip version 10.0.1, however version 19.1.1 is available.
  427. 2019-06-24 06:51:21,269 INFO - You should consider upgrading via the 'pip install --upgrade pip' command.
  428. 2019-06-24 06:51:21,347 INFO - Starting services.
  429. 2019-06-24 06:51:23,255 INFO - Traceback (most recent call last):
  430. 2019-06-24 06:51:23,255 INFO - File "PointNet2_torchgeometric.py", line 6, in <module>
  431. 2019-06-24 06:51:23,255 INFO - from torch_geometric.datasets import ModelNet
  432. 2019-06-24 06:51:23,256 INFO - ModuleNotFoundError: No module named 'torch_geometric'
  433. 2019-06-24 06:51:23,482 INFO -
  434. ################################################################################
  435.  
  436. 2019-06-24 06:51:23,483 INFO - Waiting for container to complete...
  437. 2019-06-24 06:51:23,792 INFO - Job exited with status code: 1
  438. 2019-06-24 06:51:23,811 INFO - Creating data module for output...
  439. 2019-06-24 06:51:24,322 INFO - Data module created for output.
  440. 2019-06-24 06:51:24,322 INFO - Persisting data in home...
  441. 2019-06-24 06:51:24,604 INFO - Home data persisted.
  442. 2019-06-24 06:51:24,604 INFO - [failed] Task execution failed
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