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 (./sagetex.dtx
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* Character table correct *
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[1

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[][]\OT1/cmtt/m/n/10 There are $26$ choices for each letter, and $10$ choices f
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\OT1/cmr/m/n/10 other use-ful scripts are all lo-cated in the di-rec-tory \OT1/
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[4]

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[6]
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[][]\OT1/cmtt/m/n/10 The prime factorization of the current page number plus fo
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[7]

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[][]\OT1/cmtt/m/n/10 \sageplot[angle=30, width=5cm]{plot(sin(x), 0, pi), axes=F
alse,
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[8]
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[][]\OT1/cmtt/m/n/10 We have $h(2) = \sage{h(2)}$, where $h$ is the derivative
of
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\ST@df=\write9
\openout9 = `sagetex_doctest.sage'.


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[11]
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[12]

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[13]
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[][]\OT1/cmtt/m/n/10 \caption{this figure illustrates why $2 + 2 = \protect\sag
e{2 + 2}$.}
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LaTeX Warning: Reference `sec:run-sagetex-if-necessary' on page 14 undefined on
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[]\OT1/cmtt/m/n/10 \item \sageplot[height=4cm][png]{(plot_slope_field(2*x,(x,-4
,4),
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[14]
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[]\OT1/cmtt/m/n/10 \item \visible<3->{\sageplot[height=4cm][png]{(plot_slope_fi
eld(2*x,(x,-4,4),
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[]\OT1/cmtt/m/n/10 mathematica('Export["%s/graphicsfile.eps", myplot]' % os.get
cwd())
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[15]

Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding):
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Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding):
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[][][]\OT1/cmr/m/n/8 If you don't have py-pars-ing in-stalled, you can sim-ply
copy the file
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[16]
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\OT1/cmr/m/n/10 have []\OT1/cmtt/m/n/10 \usepackage{sagetex, foo}\OT1/cmr/m/n/1
0 . You need to have just []\OT1/cmtt/m/n/10 \usepackage{sagetex}\OT1/cmr/m/n/1
0 .
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[17]) (./sub/py-and-sty.dtx [18] [19] [20]

LaTeX Warning: Reference `initplot' on page 21 undefined on input line 126.


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om \jobname.tex with
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er', version_check=\ST@versioncheck)}}%
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 [][]\OT1/cmtt/m/n/9 It is always safe to delete this file; it is not used in t
ypesetting your^^J%
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[21]
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 [][]  \OT1/cmtt/m/n/9 \IfFileExists{\jobname.sagetex.sout}{}{\AtEndDocument{\P
ackageWarningNoLine{sagetex}%
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 [][]  \OT1/cmtt/m/n/9 {`final' option provided, but \jobname.sagetex.sout^^Jdo
esn't exist! No Sage
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[22]

LaTeX Warning: Reference `inlinefn' on page 23 undefined on input line 300.

[23]
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 [][]\OT1/cmtt/m/n/9 \newcommand{\ST@missingfilebox}{\framebox[2cm]{\rule[-1cm]
{0cm}{2cm}\textbf{??}}}
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[24]

LaTeX Warning: Reference `plotfn' on page 25 undefined on input line 429.


LaTeX Warning: Reference `f:sageplottree' on page 25 undefined on input line 43
4.


LaTeX Warning: Reference `f:stig' on page 25 undefined on input line 436.

[25] [26]
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age\space does not
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LaTeX Warning: Reference `f:stig' on page 27 undefined on input line 555.


LaTeX Warning: Reference `blocksbeginend' on page 27 undefined on input line 59
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[27]
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 [][]\OT1/cmtt/m/n/9 \def\verbatim@processline{\hspace{\sagetexindent}\the\verb
atim@line\par}%
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[28]
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t)^^Jexcept:^^J
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[29]
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 [][]\OT1/cmtt/m/n/9 \ST@wsf{print 'SageTeX paused on \jobname.tex line \the\in
putlineno'^^J"""}
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[30]
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 [][]\OT1/cmtt/m/n/9 \ST@wsf{"""^^Jprint 'SageTeX unpaused on \jobname.tex line
 \the\inputlineno'}
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 [][]\OT1/cmtt/m/n/9 {\typeout{************************************************
*********************}
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 [][]\OT1/cmtt/m/n/9 plots.^^JRun Sage on \jobname.sagetex.sage, and then run L
aTeX on \jobname.tex
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********************}}
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[31] [32]
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 [][]\OT1/cmtt/m/n/9 http://www.sagemath.org/doc/installation/sagetex.html.""".
format(jobname,
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 [][]        \OT1/cmtt/m/n/9 print '**** WARNING! Skipping version check for .s
ty and .py files, and'
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 [][]    \OT1/cmtt/m/n/9 autogenstr = """% This file was *autogenerated* from {
0}.sagetex.sage with
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[33] [34]

LaTeX Warning: Reference `sec:sagemacro' on page 35 undefined on input line 105
5.


Overfull \hbox (104.5365pt too wide) in paragraph at lines 1105--1105
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rmat(counter, self.current_tex_line))
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Overfull \hbox (43.11221pt too wide) in paragraph at lines 1105--1105
 [][]          \OT1/cmtt/m/n/9 raise ValueError, 'inline() got a bad labelname
"{0}"'.format(labelname)
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[35]

LaTeX Warning: Reference `sec:verbatim-envs' on page 36 undefined on input line
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elf.current_tex_line), False)
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[36] [37]
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ounter, self.current_tex_line))
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[38]
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at(counter, self.current_tex_line))
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 [][]      \OT1/cmtt/m/n/9 lstinput = r'\lstinputlisting[firstline={0},lastline
={1},firstnumber={2},style=SageInput{escape}]{{{3}}}'
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paces(orig_input.strip('\n')))
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 [][]          \OT1/cmtt/m/n/9 tex_strs.append(lstinput.format(begin, end, begi
n - 2, scmd_fn, escape=escapeoption))
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[39]
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 [][]                  \OT1/cmtt/m/n/9 tex_strs.append(lstinput.format(begin, e
nd, begin - 2, scmd_fn, escape=''))
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LaTeX Warning: Reference `sec:sageplotmacro' on page 40 undefined on input line
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self.current_tex_line))
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 [][]              \OT1/cmtt/m/n/9 epsfile = os.path.join(self.plotdir, 'plot-{
0}.eps'.format(counter))
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lot-{0}.eps to PDF'.format(
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 [][]          \OT1/cmtt/m/n/9 plotfilename = os.path.join(self.plotdir, 'plot-
{0}.{1}'.format(counter, fmt))
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[40]
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e', str(inst)):
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 [][]                  \OT1/cmtt/m/n/9 print '  saving {0} failed; saving to {1
} instead.'.format(
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 [][]                                                    \OT1/cmtt/m/n/9 plotfi
lename, newfilename)
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 [][]              \OT1/cmtt/m/n/9 self.progress('Calling Imagemagick to conver
t plot-{0}.{1} to EPS'.format(
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[41]
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 []\OT1/cmtt/m/n/10 egrep -v '^( _st_.goboom| ?_st_.current_tex_line|print .Sag
eT)' filename.sage | md5sum
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LaTeX Warning: Reference `sec:run-sagetex-if-necessary' on page 42 undefined on
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[42]
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 [][]    \OT1/cmtt/m/n/9 os.rename(self.filename + '.sagetex.sout.tmp', self.fi
lename + '.sagetex.sout')
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Overfull \hbox (47.83716pt too wide) in paragraph at lines 1556--1556
 [][]    \OT1/cmtt/m/n/9 os.rename(self.filename + '.sagetex.scmd.tmp', self.fi
lename + '.sagetex.scmd')
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Overfull \hbox (38.38727pt too wide) in paragraph at lines 1556--1556
 [][]    \OT1/cmtt/m/n/9 self.progress('Sage processing complete. Run LaTeX on
{0}.tex again.'.format(
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) (./sub/scripts.dtx

LaTeX Warning: Reference `macro:endofdoc' on page 43 undefined on input line 27
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Overfull \hbox (24.21243pt too wide) in paragraph at lines 105--105
 [][]        \OT1/cmtt/m/n/9 if not re.search(commented_out, line) and re.searc
h(usepackage, line):
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Overfull \hbox (99.81155pt too wide) in paragraph at lines 105--105
 [][]    \OT1/cmtt/m/n/9 print '{0}.sagetex.sage not found, I think you need to
 typeset {0}.tex first.'.format(src)
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[44] [45]
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 [][]  \OT1/cmtt/m/n/9 print('Error: wrong number of arguments. Make sure to sp
ecify options first.\n')
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 [][]  \OT1/cmtt/m/n/9 print('Error: %s exists and overwrite option not specifi
ed.' % args[1])
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 [][]\OT1/cmtt/m/n/9 header = "%% SageTeX commands have been automatically remo
ved from this file and\n%% replaced with plain LaTeX. Processed %s.\n" % time.s
trftime('%a %d %b %Y %H:%M:%S', time.localtime())
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[46]
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 [][]  \OT1/cmtt/m/n/9 print('Error: wrong number of arguments. Make sure to sp
ecify options first.\n')
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 [][]  \OT1/cmtt/m/n/9 print('Error: %s exists and overwrite option not specifi
ed.' % args[1])
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 [][]\OT1/cmtt/m/n/9 """ % (src, ext, time.strftime('%a %d %b %Y %H:%M:%S', tim
e.localtime()))
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[47]
Overfull \hbox (5.45271pt too wide) in paragraph at lines 312--313
[][]\OT1/cmtt/m/n/10 \newlabel{@sageinline$\OMS/cmsy/m/n/10 h$[]\OT1/cmr/m/it/1
0 integer$\OMS/cmsy/m/n/10 i$[][]\OT1/cmtt/m/n/10 }{{$\OMS/cmsy/m/n/10 h$[]\OT1
/cmr/m/it/10 bunch of L[]T[]X code$\OMS/cmsy/m/n/10 i$[]\OT1/cmtt/m/n/10 }[]{}{
}{}{}}
 []


Overfull \hbox (10.0376pt too wide) in paragraph at lines 339--339
 [][]      \OT1/cmtt/m/n/9 print 'Error accessing %s; exiting. Does your .sout
file exist?' % fn
 []

[48]
Overfull \hbox (57.28705pt too wide) in paragraph at lines 379--379
 [][]    \OT1/cmtt/m/n/9 usepackage.setParseAction(replaceWith(r"""% "\usepacka
ge{sagetex}" line was here:
 []

[49] [50]
Overfull \hbox (0.5877pt too wide) in paragraph at lines 512--512
 [][]    \OT1/cmtt/m/n/9 self.result += ('# SageTeX (probably) paused on input
line %s.\n\n' %
 []


Overfull \hbox (10.0376pt too wide) in paragraph at lines 512--512
 [][]    \OT1/cmtt/m/n/9 self.result += ('# SageTeX (probably) unpaused on inpu
t line %s.\n\n' %
 []

) (./sub/remote-sagetex.dtx
LaTeX Font Info:    Font shape `OT1/cmtt/bx/n' in size <14.4> not available
(Font)              Font shape `OT1/cmtt/m/n' tried instead on input line 1.
 [51]
Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 ##########################################################
###############
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # You can provide a filename here and the script will read
 your login   #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # information from that file. The format must be:
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 #
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # server = 'http://foo.com:8000'
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # username = 'my_name'
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # password = 's33krit'
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 #
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # You can omit one or more of those lines, use " quotes, a
nd put hash   #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # marks at the beginning of a line for comments. Command-l
ine args      #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 # take precedence over information from the file.
              #
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 ##########################################################
###############
 []


Overfull \hbox (0.5877pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 login_info_file = None       # e.g. '/home/foo/Private/sag
etex-login.txt'
 []


Overfull \hbox (19.48749pt too wide) in paragraph at lines 98--98
 [][]\OT1/cmtt/m/n/9 usage = """Process a SageTeX-generated .sage file using a
remote Sage server.
 []

[52]
Overfull \hbox (33.66232pt too wide) in paragraph at lines 98--98
 [][]    \OT1/cmtt/m/n/9 print('Error: must specify exactly one file. Please sp
ecify options first.',
 []

[53]
Overfull \hbox (5.31265pt too wide) in paragraph at lines 134--134
 [][]        \OT1/cmtt/m/n/9 inline = re.compile(r" _st_.inline\((?P<num>\d+),
(?P<code>.*)\)")
 []


LaTeX Warning: Reference `macro:goboom' on page 54 undefined on input line 145.


[54] [55]
Overfull \hbox (0.5877pt too wide) in paragraph at lines 262--262
 [][]        \OT1/cmtt/m/n/9 return 'session={0}&'.format(self._session) + urll
ib.urlencode(d)
 []


Overfull \hbox (10.0376pt too wide) in paragraph at lines 262--262
 [][]        \OT1/cmtt/m/n/9 with closing(urllib.urlopen(self._srv + '/simple/'
 + 'file' + '?' +
 []


Overfull \hbox (24.21243pt too wide) in paragraph at lines 262--262
 [][]                \OT1/cmtt/m/n/9 print('Remote server reported {0} could no
t be found:'.format(
 []


Overfull \hbox (10.0376pt too wide) in paragraph at lines 295--295
 [][]        \OT1/cmtt/m/n/9 result = self._get_url('compute', self._encode({'c
ode': realcode}))
 []


Overfull \hbox (24.21243pt too wide) in paragraph at lines 295--295
 [][]                \OT1/cmtt/m/n/9 result = self._get_url('status', self._enc
ode({'cell': cell}))
 []

[56]
Overfull \hbox (5.31265pt too wide) in paragraph at lines 295--295
 [][]        \OT1/cmtt/m/n/9 result = self._do_cell(' __st_plot__({0}, {1})'.fo
rmat(num, code))
 []


Overfull \hbox (14.76254pt too wide) in paragraph at lines 295--295
 [][]            \OT1/cmtt/m/n/9 self._get_file(fn, result['cell_id'], os.path.
join(plotdir, fn))
 []


Overfull \hbox (5.31265pt too wide) in paragraph at lines 339--339
 [][]    \OT1/cmtt/m/n/9 return r'\newlabel{@sageinline' + str(n) + '}{{' + s
+ '}{}{}{}{}}\n'
 []


Overfull \hbox (19.48749pt too wide) in paragraph at lines 339--339
 [][]\OT1/cmtt/m/n/9 error = re.compile("(^" + traceback_str + ")|(^Syntax Erro
r:)", re.MULTILINE)
 []

[57]
Overfull \hbox (10.0376pt too wide) in paragraph at lines 339--339
 [][]\OT1/cmtt/m/n/9 **** Running Sage on {1}.sage failed! Fix {1}.tex and try
again.""".format(
 []


Overfull \hbox (5.31265pt too wide) in paragraph at lines 415--415
 [][]\OT1/cmtt/m/n/9 print('Processing Sage code for {0}.tex using remote Sage
server.'.format(
 []


Overfull \hbox (14.76254pt too wide) in paragraph at lines 415--415
 [][]        \OT1/cmtt/m/n/9 print('Reading login information from {0}.'.format
(login_info_file))
 []


Overfull \hbox (14.76254pt too wide) in paragraph at lines 415--415
 [][]    \OT1/cmtt/m/n/9 password = getpass('Please enter password for user {0}
 on {1}: '.format(
 []


Overfull \hbox (5.31265pt too wide) in paragraph at lines 415--415
 [][]\OT1/cmtt/m/n/9 sout = '% This file was *autogenerated* from the file {0}.
sage.\n'.format(
 []

[58]
Overfull \hbox (24.21243pt too wide) in paragraph at lines 431--431
 [][]\OT1/cmtt/m/n/9 print('Sage processing complete. Run LaTeX on {0}.tex agai
n.'.format(jobname))
 []

) [59] [60]
*******************
* Checksum passed *
*******************
No file sagetex.gls.
No file sagetex.ind.
*********************************************************************

Package sagetex Warning: there were undefined Sage formulas and/or plots.
Run Sage on sagetex.sagetex.sage, and then run LaTeX on sagetex.tex again.

*********************************************************************
Package atveryend Info: Empty hook `BeforeClearDocument' on input line 139.
Package atveryend Info: Empty hook `AfterLastShipout' on input line 139.
(./sagetex.aux)
Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 139.
Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 139.


Package rerunfilecheck Warning: File `sagetex.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

Package rerunfilecheck Info: Checksums for `sagetex.out':
(rerunfilecheck)             Before: <no file>
(rerunfilecheck)             After:  FF125A39FE02A4E2F44E7A1A30949F4E;3240.

LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line 139.
 )
(\end occurred inside a group at level 1)

### simple group (level 1) entered at line 27 ({)
### bottom level
Here is how much of TeX's memory you used:
 17376 strings out of 494945
 321474 string characters out of 6181445
 389833 words of memory out of 5000000
 20233 multiletter control sequences out of 15000+600000
 12959 words of font info for 47 fonts, out of 8000000 for 9000
 14 hyphenation exceptions out of 8191
 55i,17n,54p,429b,1543s stack positions out of 5000i,500n,10000p,200000b,80000s
</usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pf
b></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/
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sr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb></usr/share/texmf-
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amsfonts/cm/cmsy10.pfb></usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cm
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hare/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf-dis
t/fonts/type1/public/amsfonts/cm/cmti7.pfb></usr/share/texmf-dist/fonts/type1/p
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</usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt8.pfb></usr/share/tex
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Output written on sagetex.pdf (60 pages, 426773 bytes).
PDF statistics:
 506 PDF objects out of 1000 (max. 8388607)
 414 compressed objects within 5 object streams
 138 named destinations out of 1000 (max. 500000)
 13 words of extra memory for PDF output out of 10000 (max. 10000000)