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vrts_3_way_IA

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Apr 30th, 2022
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  1. qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: /home/vrts/host/vrts1240K/fstatsa.txt
  5. popleft: /home/vrts/host/vrts1240K/left.txt
  6. popright: /home/vrts/host/vrts1240K/right.txt
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: 1759219123
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. vrts
  15. Iberia_Emporion_colony
  16. Hungary_Avar_5_AV2
  17. Iran_Hasanlu_IA.SG
  18.  
  19. right pops:
  20. Mbuti.DG
  21. Tarim_EMBA1
  22. CHG
  23. Balkan_HG
  24. Iran_N
  25. EHG
  26. Turkey_N.SG
  27. Russia_MLBA_Sintashta
  28. Switzerland_Bichon.SG
  29. Natufian
  30. Russia_DevilsCave_N.SG
  31. Greece_Minoan_Lassithi
  32. ONG.SG
  33.  
  34. codimension 1
  35. f4info:
  36. f4rank: 2 dof: 10 chisq: 11.814 tail: 0.297713441 dofdiff: 12 chisqdiff: -11.814 taildiff: 1
  37. B:
  38. scale 1.000 1.000
  39. Tarim_EMBA1 1.013 -0.961
  40. CHG -0.030 -0.109
  41. Balkan_HG 1.866 -0.073
  42. Iran_N -0.117 -0.254
  43. EHG 1.613 -0.434
  44. Turkey_N.SG 0.260 1.924
  45. Russia_MLBA_Sintashta 0.998 0.247
  46. Switzerland_Bichon.SG 1.867 -0.430
  47. Natufian 0.018 1.495
  48. Russia_DevilsCave_N.SG 0.473 0.258
  49. Greece_Minoan_Lassithi 0.225 2.133
  50. ONG.SG 0.227 -0.100
  51. A:
  52. scale 526.723 1078.008
  53. Iberia_Emporion_colony 0.174 0.919
  54. Hungary_Avar_5_AV2 1.528 -0.681
  55. Iran_Hasanlu_IA.SG -0.798 -1.300
  56.  
  57.  
  58. full rank
  59. f4info:
  60. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 11.814 taildiff: 0.297713441
  61. B:
  62. scale 778.232 303.430 611.613
  63. Tarim_EMBA1 0.260 1.316 0.240
  64. CHG 0.025 0.044 0.130
  65. Balkan_HG 0.832 1.794 -1.433
  66. Iran_N 0.546 0.178 0.823
  67. EHG 0.348 1.597 -1.037
  68. Turkey_N.SG 1.734 -0.009 -1.400
  69. Russia_MLBA_Sintashta 0.867 0.969 -0.830
  70. Switzerland_Bichon.SG 0.101 1.738 -1.516
  71. Natufian 1.510 -0.123 -0.918
  72. Russia_DevilsCave_N.SG 0.950 0.590 -0.191
  73. Greece_Minoan_Lassithi 1.912 -0.070 -1.503
  74. ONG.SG 0.461 0.371 0.179
  75. A:
  76. scale 1.732 1.732 1.732
  77. Iberia_Emporion_colony 1.732 0.000 0.000
  78. Hungary_Avar_5_AV2 0.000 1.732 0.000
  79. Iran_Hasanlu_IA.SG 0.000 0.000 1.732
  80.  
  81.  
  82. best coefficients: 0.555 0.111 0.334
  83. totmean: 0.555 0.111 0.334
  84. boot mean: 0.555 0.111 0.334
  85. std. errors: 0.068 0.044 0.059
  86.  
  87. error covariance (* 1,000,000)
  88. 4668 -1534 -3134
  89. -1534 1925 -390
  90. -3134 -390 3524
  91.  
  92.  
  93. summ: vrts 3 0.297713 0.555 0.111 0.334 4668 -1534 -3134 1925 -390 ...
  94. 3524
  95.  
  96. fixed pat wt dof chisq tail prob
  97. 000 0 10 11.814 0.297713 0.555 0.111 0.334
  98. 001 1 11 47.101 2.06324e-06 0.870 0.130 0.000
  99. 010 1 11 18.596 0.0687404 0.644 0.000 0.356
  100. 100 1 11 76.487 7.02214e-12 0.000 0.238 0.762
  101. 011 2 12 53.993 2.74011e-07 1.000 0.000 0.000
  102. 101 2 12 279.021 0 0.000 1.000 0.000
  103. 110 2 12 98.404 1.14288e-15 0.000 0.000 1.000
  104. best pat: 000 0.297713 - -
  105. best pat: 010 0.0687404 chi(nested): 6.782 p-value for nested model: 0.00920651
  106. best pat: 011 2.74011e-07 chi(nested): 35.397 p-value for nested model: 2.68861e-09
  107.  
  108. coeffs: 0.555 0.111 0.334
  109.  
  110. ## dscore:: f_4(Base, Fit, Rbase, right2)
  111. ## genstat:: f_4(Base, Fit, right1, right2)
  112.  
  113. details: Iberia_Emporion_colony Tarim_EMBA1 0.000334 0.661372
  114. details: Hungary_Avar_5_AV2 Tarim_EMBA1 0.004337 7.521867
  115. details: Iran_Hasanlu_IA.SG Tarim_EMBA1 0.000393 0.688384
  116. dscore: Tarim_EMBA1 f4: 0.000799 Z: 1.746816
  117.  
  118. details: Iberia_Emporion_colony CHG 0.000032 0.065633
  119. details: Hungary_Avar_5_AV2 CHG 0.000145 0.249989
  120. details: Iran_Hasanlu_IA.SG CHG 0.000213 0.381516
  121. dscore: CHG f4: 0.000105 Z: 0.235759
  122.  
  123. details: Iberia_Emporion_colony Balkan_HG 0.001069 2.522487
  124. details: Hungary_Avar_5_AV2 Balkan_HG 0.005913 11.838335
  125. details: Iran_Hasanlu_IA.SG Balkan_HG -0.002343 -4.801453
  126. dscore: Balkan_HG f4: 0.000468 Z: 1.221507
  127.  
  128. details: Iberia_Emporion_colony Iran_N 0.000702 1.707983
  129. details: Hungary_Avar_5_AV2 Iran_N 0.000588 1.252837
  130. details: Iran_Hasanlu_IA.SG Iran_N 0.001346 2.839451
  131. dscore: Iran_N f4: 0.000904 Z: 2.426853
  132.  
  133. details: Iberia_Emporion_colony EHG 0.000447 0.872875
  134. details: Hungary_Avar_5_AV2 EHG 0.005264 8.881295
  135. details: Iran_Hasanlu_IA.SG EHG -0.001696 -2.852375
  136. dscore: EHG f4: 0.000267 Z: 0.578544
  137.  
  138. details: Iberia_Emporion_colony Turkey_N.SG 0.002229 4.811887
  139. details: Hungary_Avar_5_AV2 Turkey_N.SG -0.000031 -0.061048
  140. details: Iran_Hasanlu_IA.SG Turkey_N.SG -0.002289 -4.423453
  141. dscore: Turkey_N.SG f4: 0.000469 Z: 1.123167
  142.  
  143. details: Iberia_Emporion_colony Russia_MLBA_Sintashta 0.001114 3.025396
  144. details: Hungary_Avar_5_AV2 Russia_MLBA_Sintashta 0.003192 7.793945
  145. details: Iran_Hasanlu_IA.SG Russia_MLBA_Sintashta -0.001356 -3.273828
  146. dscore: Russia_MLBA_Sintashta f4: 0.000520 Z: 1.582841
  147.  
  148. details: Iberia_Emporion_colony Switzerland_Bichon.SG 0.000130 0.220760
  149. details: Hungary_Avar_5_AV2 Switzerland_Bichon.SG 0.005729 8.240117
  150. details: Iran_Hasanlu_IA.SG Switzerland_Bichon.SG -0.002479 -3.514610
  151. dscore: Switzerland_Bichon.SG f4: -0.000119 Z: -0.218386
  152.  
  153. details: Iberia_Emporion_colony Natufian 0.001940 2.823285
  154. details: Hungary_Avar_5_AV2 Natufian -0.000404 -0.534351
  155. details: Iran_Hasanlu_IA.SG Natufian -0.001501 -1.979544
  156. dscore: Natufian f4: 0.000530 Z: 0.897196
  157.  
  158. details: Iberia_Emporion_colony Russia_DevilsCave_N.SG 0.001220 2.513067
  159. details: Hungary_Avar_5_AV2 Russia_DevilsCave_N.SG 0.001943 3.424706
  160. details: Iran_Hasanlu_IA.SG Russia_DevilsCave_N.SG -0.000312 -0.582849
  161. dscore: Russia_DevilsCave_N.SG f4: 0.000789 Z: 1.821828
  162.  
  163. details: Iberia_Emporion_colony Greece_Minoan_Lassithi 0.002457 5.539378
  164. details: Hungary_Avar_5_AV2 Greece_Minoan_Lassithi -0.000230 -0.436642
  165. details: Iran_Hasanlu_IA.SG Greece_Minoan_Lassithi -0.002458 -4.892201
  166. dscore: Greece_Minoan_Lassithi f4: 0.000517 Z: 1.285706
  167.  
  168. details: Iberia_Emporion_colony ONG.SG 0.000592 1.318693
  169. details: Hungary_Avar_5_AV2 ONG.SG 0.001224 2.414574
  170. details: Iran_Hasanlu_IA.SG ONG.SG 0.000293 0.559162
  171. dscore: ONG.SG f4: 0.000563 Z: 1.370505
  172.  
  173. gendstat: Mbuti.DG Tarim_EMBA1 1.747
  174. gendstat: Mbuti.DG CHG 0.236
  175. gendstat: Mbuti.DG Balkan_HG 1.222
  176. gendstat: Mbuti.DG Iran_N 2.427
  177. gendstat: Mbuti.DG EHG 0.579
  178. gendstat: Mbuti.DG Turkey_N.SG 1.123
  179. gendstat: Mbuti.DG Russia_MLBA_Sintashta 1.583
  180. gendstat: Mbuti.DG Switzerland_Bichon.SG -0.218
  181. gendstat: Mbuti.DG Natufian 0.897
  182. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 1.822
  183. gendstat: Mbuti.DG Greece_Minoan_Lassithi 1.286
  184. gendstat: Mbuti.DG ONG.SG 1.371
  185. gendstat: Tarim_EMBA1 CHG -1.391
  186. gendstat: Tarim_EMBA1 Balkan_HG -0.848
  187. gendstat: Tarim_EMBA1 Iran_N 0.234
  188. gendstat: Tarim_EMBA1 EHG -1.275
  189. gendstat: Tarim_EMBA1 Turkey_N.SG -0.702
  190. gendstat: Tarim_EMBA1 Russia_MLBA_Sintashta -0.827
  191. gendstat: Tarim_EMBA1 Switzerland_Bichon.SG -1.662
  192. gendstat: Tarim_EMBA1 Natufian -0.413
  193. gendstat: Tarim_EMBA1 Russia_DevilsCave_N.SG -0.022
  194. gendstat: Tarim_EMBA1 Greece_Minoan_Lassithi -0.610
  195. gendstat: Tarim_EMBA1 ONG.SG -0.536
  196. gendstat: CHG Balkan_HG 0.832
  197. gendstat: CHG Iran_N 1.879
  198. gendstat: CHG EHG 0.326
  199. gendstat: CHG Turkey_N.SG 0.778
  200. gendstat: CHG Russia_MLBA_Sintashta 1.111
  201. gendstat: CHG Switzerland_Bichon.SG -0.383
  202. gendstat: CHG Natufian 0.651
  203. gendstat: CHG Russia_DevilsCave_N.SG 1.374
  204. gendstat: CHG Greece_Minoan_Lassithi 0.918
  205. gendstat: CHG ONG.SG 0.922
  206. gendstat: Balkan_HG Iran_N 1.116
  207. gendstat: Balkan_HG EHG -0.553
  208. gendstat: Balkan_HG Turkey_N.SG 0.001
  209. gendstat: Balkan_HG Russia_MLBA_Sintashta 0.225
  210. gendstat: Balkan_HG Switzerland_Bichon.SG -1.494
  211. gendstat: Balkan_HG Natufian 0.106
  212. gendstat: Balkan_HG Russia_DevilsCave_N.SG 0.754
  213. gendstat: Balkan_HG Greece_Minoan_Lassithi 0.131
  214. gendstat: Balkan_HG ONG.SG 0.234
  215. gendstat: Iran_N EHG -1.363
  216. gendstat: Iran_N Turkey_N.SG -1.063
  217. gendstat: Iran_N Russia_MLBA_Sintashta -1.234
  218. gendstat: Iran_N Switzerland_Bichon.SG -1.874
  219. gendstat: Iran_N Natufian -0.616
  220. gendstat: Iran_N Russia_DevilsCave_N.SG -0.257
  221. gendstat: Iran_N Greece_Minoan_Lassithi -0.997
  222. gendstat: Iran_N ONG.SG -0.777
  223. gendstat: EHG Turkey_N.SG 0.431
  224. gendstat: EHG Russia_MLBA_Sintashta 0.735
  225. gendstat: EHG Switzerland_Bichon.SG -0.736
  226. gendstat: EHG Natufian 0.393
  227. gendstat: EHG Russia_DevilsCave_N.SG 1.106
  228. gendstat: EHG Greece_Minoan_Lassithi 0.539
  229. gendstat: EHG ONG.SG 0.615
  230. gendstat: Turkey_N.SG Russia_MLBA_Sintashta 0.166
  231. gendstat: Turkey_N.SG Switzerland_Bichon.SG -1.116
  232. gendstat: Turkey_N.SG Natufian 0.100
  233. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.674
  234. gendstat: Turkey_N.SG Greece_Minoan_Lassithi 0.135
  235. gendstat: Turkey_N.SG ONG.SG 0.207
  236. gendstat: Russia_MLBA_Sintashta Switzerland_Bichon.SG -1.413
  237. gendstat: Russia_MLBA_Sintashta Natufian 0.018
  238. gendstat: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG 0.724
  239. gendstat: Russia_MLBA_Sintashta Greece_Minoan_Lassithi -0.011
  240. gendstat: Russia_MLBA_Sintashta ONG.SG 0.119
  241. gendstat: Switzerland_Bichon.SG Natufian 0.910
  242. gendstat: Switzerland_Bichon.SG Russia_DevilsCave_N.SG 1.554
  243. gendstat: Switzerland_Bichon.SG Greece_Minoan_Lassithi 1.167
  244. gendstat: Switzerland_Bichon.SG ONG.SG 1.196
  245. gendstat: Natufian Russia_DevilsCave_N.SG 0.397
  246. gendstat: Natufian Greece_Minoan_Lassithi -0.023
  247. gendstat: Natufian ONG.SG 0.051
  248. gendstat: Russia_DevilsCave_N.SG Greece_Minoan_Lassithi -0.586
  249. gendstat: Russia_DevilsCave_N.SG ONG.SG -0.576
  250. gendstat: Greece_Minoan_Lassithi ONG.SG 0.104
  251.  
  252. ##end of qpAdm: 6.277 seconds cpu 1.032 Mbytes in use
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