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Jan 22nd, 2019
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  1. python3.6 /home/dkennetz/.local/bin/read_fast5_basecaller.py -i ./seqrun/fast5/ -t 1 -s ./good_reads/ -f FLO-MIN106 -k SQK-LSK109 -r -o fastq
  2.  
  3. python3.6 /home/dkennetz/.local/bin/h5_validate /home/dkennetz/.local/lib/python3.6/site-packages/h5_validator/schemas/single_read_fast5.yaml seqrun/fast5/0/seqrun.fast5 -v
  4.  
  5. Matcher <'UniqueGlobalKey', type=group match_type=exact count=
  6. {'minimum_count': 1, 'maximum_count': 1}> was not satisfied after matching <HDF5 file "seqrun.fast5" (mode r)>
  7.  
  8. Error at /:
  9.  
  10. Matcher <'PreviousReadInfo', type=group match_type=exact count=
  11. {'minimum_count': 1, 'maximum_count': 1}> was not satisfied after matching <HDF5 file "seqrun.fast5" (mode r)>
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