Public Pastes
daily pastebin goal
11%
SHARE
TWEET

Untitled

a guest Jan 11th, 2017 85 Never
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
  1. colby@Linux-PC:~$ sudo apt-get install virtualenv git build-essential
  2. [sudo] password for colby:
  3. Reading package lists... Done
  4. Building dependency tree      
  5. Reading state information... Done
  6. build-essential is already the newest version (12.1ubuntu2).
  7. git is already the newest version (1:2.7.4-0ubuntu1).
  8. virtualenv is already the newest version (15.0.1+ds-3ubuntu1).
  9. 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
  10. colby@Linux-PC:~$ sudo apt-get upgrade virtualenv git build-essential
  11. Reading package lists... Done
  12. Building dependency tree      
  13. Reading state information... Done
  14. build-essential is already the newest version (12.1ubuntu2).
  15. git is already the newest version (1:2.7.4-0ubuntu1).
  16. virtualenv is already the newest version (15.0.1+ds-3ubuntu1).
  17. Calculating upgrade... Done
  18. The following packages have been kept back:
  19.   gnome-software gnome-software-common snapd ubuntu-core-launcher
  20. 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
  21. colby@Linux-PC:~$ sudo apt-get install virtualenv git build-essential
  22. Reading package lists... Done
  23. Building dependency tree      
  24. Reading state information... Done
  25. build-essential is already the newest version (12.1ubuntu2).
  26. git is already the newest version (1:2.7.4-0ubuntu1).
  27. virtualenv is already the newest version (15.0.1+ds-3ubuntu1).
  28. 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded.
  29. colby@Linux-PC:~$ virtualenv --python=python3 --system-site-packages orange3venvAlready using interpreter /usr/bin/python3
  30. Using base prefix '/usr'
  31. New python executable in /home/colby/orange3venv/bin/python3
  32. Not overwriting existing python script /home/colby/orange3venv/bin/python (you must use /home/colby/orange3venv/bin/python3)
  33. Installing setuptools, pkg_resources, pip, wheel...done.
  34. colby@Linux-PC:~$ source orange3venv/bin/activate
  35. (orange3venv) colby@Linux-PC:~$ git clone https://github.com/biolab/orange3.git
  36. fatal: destination path 'orange3' already exists and is not an empty directory.
  37. (orange3venv) colby@Linux-PC:~$ cd orange3
  38. (orange3venv) colby@Linux-PC:~/orange3$ pip install -r requirements-core.txt
  39. Collecting numpy>=1.9.0 (from -r requirements-core.txt (line 1))
  40.   Using cached numpy-1.11.3-cp35-cp35m-manylinux1_x86_64.whl
  41. Collecting scipy>=0.11.0 (from -r requirements-core.txt (line 2))
  42.   Using cached scipy-0.18.1-cp35-cp35m-manylinux1_x86_64.whl
  43. Collecting scikit-learn>=0.18.1 (from -r requirements-core.txt (line 3))
  44.   Using cached scikit_learn-0.18.1-cp35-cp35m-manylinux1_x86_64.whl
  45. Collecting bottleneck>=1.0.0 (from -r requirements-core.txt (line 4))
  46.   Using cached Bottleneck-1.2.0.tar.gz
  47.     Complete output from command python setup.py egg_info:
  48.     /bin/sh: 1: svnversion: not found
  49.     /bin/sh: 1: svnversion: not found
  50.     non-existing path in 'numpy/distutils': 'site.cfg'
  51.     Could not locate executable gfortran
  52.     Could not locate executable f95
  53.     Could not locate executable ifort
  54.     Could not locate executable ifc
  55.     Could not locate executable lf95
  56.     Could not locate executable pgfortran
  57.     Could not locate executable f90
  58.     Could not locate executable f77
  59.     Could not locate executable fort
  60.     Could not locate executable efort
  61.     Could not locate executable efc
  62.     Could not locate executable g77
  63.     Could not locate executable g95
  64.     Could not locate executable pathf95
  65.     don't know how to compile Fortran code on platform 'posix'
  66.     _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
  67.      int exp (void);
  68.          ^
  69.     _configtest.o: In function `main':
  70.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/_configtest.c:6: undefined reference to `exp'
  71.     collect2: error: ld returned 1 exit status
  72.     _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
  73.      int exp (void);
  74.          ^
  75.     _configtest.c:1:20: fatal error: Python.h: No such file or directory
  76.     compilation terminated.
  77.     Running from numpy source directory.
  78.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/setup.py:366: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
  79.       run_build = parse_setuppy_commands()
  80.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/system_info.py:572: UserWarning:
  81.         Atlas (http://math-atlas.sourceforge.net/) libraries not found.
  82.         Directories to search for the libraries can be specified in the
  83.         numpy/distutils/site.cfg file (section [atlas]) or by setting
  84.         the ATLAS environment variable.
  85.       self.calc_info()
  86.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/system_info.py:572: UserWarning:
  87.         Blas (http://www.netlib.org/blas/) libraries not found.
  88.         Directories to search for the libraries can be specified in the
  89.         numpy/distutils/site.cfg file (section [blas]) or by setting
  90.         the BLAS environment variable.
  91.       self.calc_info()
  92.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/system_info.py:572: UserWarning:
  93.         Blas (http://www.netlib.org/blas/) sources not found.
  94.         Directories to search for the sources can be specified in the
  95.         numpy/distutils/site.cfg file (section [blas_src]) or by setting
  96.         the BLAS_SRC environment variable.
  97.       self.calc_info()
  98.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/system_info.py:572: UserWarning:
  99.         Lapack (http://www.netlib.org/lapack/) libraries not found.
  100.         Directories to search for the libraries can be specified in the
  101.         numpy/distutils/site.cfg file (section [lapack]) or by setting
  102.         the LAPACK environment variable.
  103.       self.calc_info()
  104.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/system_info.py:572: UserWarning:
  105.         Lapack (http://www.netlib.org/lapack/) sources not found.
  106.         Directories to search for the sources can be specified in the
  107.         numpy/distutils/site.cfg file (section [lapack_src]) or by setting
  108.         the LAPACK_SRC environment variable.
  109.       self.calc_info()
  110.     /usr/lib/python3.5/distutils/dist.py:261: UserWarning: Unknown distribution option: 'define_macros'
  111.       warnings.warn(msg)
  112.     Traceback (most recent call last):
  113.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 157, in save_modules
  114.         yield saved
  115.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 198, in setup_context
  116.         yield
  117.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 255, in run_setup
  118.         DirectorySandbox(setup_dir).run(runner)
  119.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 285, in run
  120.         return func()
  121.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 253, in runner
  122.         _execfile(setup_script, ns)
  123.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 47, in _execfile
  124.         exec(code, globals, locals)
  125.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/setup.py", line 391, in <module>
  126.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/setup.py", line 383, in setup_package
  127.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/core.py", line 169, in setup
  128.       File "/usr/lib/python3.5/distutils/core.py", line 148, in setup
  129.         dist.run_commands()
  130.       File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands
  131.         self.run_command(cmd)
  132.       File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
  133.         cmd_obj.run()
  134.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/bdist_egg.py", line 152, in run
  135.         self.run_command("egg_info")
  136.       File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
  137.         self.distribution.run_command(command)
  138.       File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
  139.         cmd_obj.run()
  140.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/egg_info.py", line 18, in run
  141.       File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
  142.         self.distribution.run_command(command)
  143.       File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
  144.         cmd_obj.run()
  145.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 148, in run
  146.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 165, in build_sources
  147.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 324, in build_extension_sources
  148.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 377, in generate_sources
  149.       File "numpy/core/setup.py", line 416, in generate_config_h
  150.       File "numpy/core/setup.py", line 40, in check_types
  151.         sources=["bottleneck/src/nonreduce.c"],
  152.       File "numpy/core/setup.py", line 275, in check_types
  153.     SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
  154.    
  155.     During handling of the above exception, another exception occurred:
  156.    
  157.     Traceback (most recent call last):
  158.       File "<string>", line 1, in <module>
  159.       File "/tmp/pip-build-ickhb0l1/bottleneck/setup.py", line 109, in <module>
  160.         setup(**metadata)
  161.       File "/usr/lib/python3.5/distutils/core.py", line 108, in setup
  162.         _setup_distribution = dist = klass(attrs)
  163.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/dist.py", line 317, in __init__
  164.         self.fetch_build_eggs(attrs['setup_requires'])
  165.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/dist.py", line 372, in fetch_build_eggs
  166.         replace_conflicting=True,
  167.       File "/home/colby/orange3venv/lib/python3.5/site-packages/pkg_resources/__init__.py", line 826, in resolve
  168.         dist = best[req.key] = env.best_match(req, ws, installer)
  169.       File "/home/colby/orange3venv/lib/python3.5/site-packages/pkg_resources/__init__.py", line 1092, in best_match
  170.         return self.obtain(req, installer)
  171.       File "/home/colby/orange3venv/lib/python3.5/site-packages/pkg_resources/__init__.py", line 1104, in obtain
  172.         return installer(requirement)
  173.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/dist.py", line 440, in fetch_build_egg
  174.         return cmd.easy_install(req)
  175.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 674, in easy_install
  176.         return self.install_item(spec, dist.location, tmpdir, deps)
  177.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 700, in install_item
  178.         dists = self.install_eggs(spec, download, tmpdir)
  179.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 881, in install_eggs
  180.         return self.build_and_install(setup_script, setup_base)
  181.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 1120, in build_and_install
  182.         self.run_setup(setup_script, setup_base, args)
  183.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/easy_install.py", line 1106, in run_setup
  184.         run_setup(setup_script, args)
  185.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 258, in run_setup
  186.         raise
  187.       File "/usr/lib/python3.5/contextlib.py", line 77, in __exit__
  188.         self.gen.throw(type, value, traceback)
  189.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 198, in setup_context
  190.         yield
  191.       File "/usr/lib/python3.5/contextlib.py", line 77, in __exit__
  192.         self.gen.throw(type, value, traceback)
  193.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 169, in save_modules
  194.         saved_exc.resume()
  195.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 144, in resume
  196.         six.reraise(type, exc, self._tb)
  197.       File "/home/colby/orange3venv/lib/python3.5/site-packages/pkg_resources/_vendor/six.py", line 685, in reraise
  198.         raise value.with_traceback(tb)
  199.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 157, in save_modules
  200.         yield saved
  201.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 198, in setup_context
  202.         yield
  203.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 255, in run_setup
  204.         DirectorySandbox(setup_dir).run(runner)
  205.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 285, in run
  206.         return func()
  207.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 253, in runner
  208.         _execfile(setup_script, ns)
  209.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/sandbox.py", line 47, in _execfile
  210.         exec(code, globals, locals)
  211.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/setup.py", line 391, in <module>
  212.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/setup.py", line 383, in setup_package
  213.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/core.py", line 169, in setup
  214.       File "/usr/lib/python3.5/distutils/core.py", line 148, in setup
  215.         dist.run_commands()
  216.       File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands
  217.         self.run_command(cmd)
  218.       File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
  219.         cmd_obj.run()
  220.       File "/home/colby/orange3venv/lib/python3.5/site-packages/setuptools/command/bdist_egg.py", line 152, in run
  221.         self.run_command("egg_info")
  222.       File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
  223.         self.distribution.run_command(command)
  224.       File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
  225.         cmd_obj.run()
  226.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/egg_info.py", line 18, in run
  227.       File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
  228.         self.distribution.run_command(command)
  229.       File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
  230.         cmd_obj.run()
  231.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 148, in run
  232.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 165, in build_sources
  233.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 324, in build_extension_sources
  234.       File "/tmp/easy_install-xngq81fb/numpy-1.12.0rc2/numpy/distutils/command/build_src.py", line 377, in generate_sources
  235.       File "numpy/core/setup.py", line 416, in generate_config_h
  236.       File "numpy/core/setup.py", line 40, in check_types
  237.         sources=["bottleneck/src/nonreduce.c"],
  238.       File "numpy/core/setup.py", line 275, in check_types
  239.     SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
  240.     _configtest.o: In function `main':
  241.     /tmp/easy_install-xngq81fb/numpy-1.12.0rc2/_configtest.c:6: undefined reference to `exp'
  242.     collect2: error: ld returned 1 exit status
  243.     _configtest.c:1:20: fatal error: Python.h: No such file or directory
  244.     compilation terminated.
  245.    
  246.     ----------------------------------------
  247. Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-ickhb0l1/bottleneck/
  248. (orange3venv) colby@Linux-PC:~/orange3$
RAW Paste Data
Top