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Jul 25th, 2012
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  1. $ ls CEU*.vcf.gz | xargs vcf-merge >CEUmerge.vcf
  2. Use of qw(...) as parentheses is deprecated at /opt/vcftools_0.1.9/perl//Vcf.pm line 1622.
  3. Broken VCF header, no column names?
  4. at /opt/vcftools_0.1.9/perl//Vcf.pm line 177
  5. Vcf::throw('Vcf4_1=HASH(0x1da3d30)', 'Broken VCF header, no column names?') called at /opt/vcftools_0.1.9/perl//Vcf.pm line 868
  6. VcfReader::_read_column_names('Vcf4_1=HASH(0x1da3d30)') called at /opt/vcftools_0.1.9/perl//Vcf.pm line 610
  7. VcfReader::parse_header('Vcf4_1=HASH(0x1da3d30)') called at /usr/local/bin/vcf-merge line 168
  8. main::init_cols('HASH(0x1d9ff80)', 'Vcf4_1=HASH(0x1da3478)') called at /usr/local/bin/vcf-merge line 264
  9. main::merge_vcf_files('HASH(0x1d9ff80)') called at /usr/local/bin/vcf-merge line 12
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