{
    "id": "a65fa62bcebc0418cbb947485a63b30cd",
    "name": "Fastx trimmer",
    "label": "Fastx trimmer",
    "type": "",
    "groups": [
        {
            "id": "idPanelData1",
            "name": "Select data:",
            "label": "Select input data",
            "properties": [
                {
                    "id": "FastxTrimmer_sequencefile",
                    "validator": {
                        "name": "",
                        "required": true
                    },
                    "name": "name0",
                    "label": "select file(s)",
                    "type": "FileInput"
                }
            ],
            "type": "step"
        },
        {
            "id": "idPanel2",
            "name": "Remove Non-Biological Sequences",
            "label": "Remove Non-Biological Sequences",
            "properties": [
                {
                    "id": "FastxTrimmer_",
                    "isVisible": true,
                    "name": "This tool trims (cut bases from) sequences in a FASTQ file.",
                    "label": "This tool trims (cut bases from) sequences in a FASTQ file.",
                    "type": "Info"
                },
                {
                    "id": "FastxTrimmer_fileFormat",
                    "isVisible": true,
                    "validator": {
                        "id": "",
                        "name": "filecontains",
                        "label": "",
                        "required": true,
                        "rules": [
                            {
                                "MustContain": [
                                    "Single End Read",
                                    "Pair End Concatenated Read",
                                    "Pair End with Associated mate in separate file"
                                ]
                            }
                        ]
                    },
                    "name": "File Contains:",
                    "value": "0",
                    "label": "File Contains:",
                    "type": "selection"
                },
                {
                    "id": "FastxTrimmer_firstBaseToKeep",
                    "isVisible": true,
                    "validator": {
                        "id": "",
                        "name": "First base to keep field",
                        "label": "",
                        "required": true,
                        "rules": [
                            {
                                "IntAbove": [
                                    0
                                ]
                            },
                            {
                                "IntBelowField": [
                                    "lastBaseToKeep",
                                    "last base"
                                ]
                            }
                        ]
                    },
                    "name": "First base to keep:",
                    "value": "1",
                    "label": "First base to keep:",
                    "type": "Number"
                },
                {
                    "id": "FastxTrimmer_lastBaseToKeep",
                    "isVisible": true,
                    "validator": {
                        "id": "",
                        "name": "Last base to keep field",
                        "label": "",
                        "required": true,
                        "rules": [
                            {
                                "IntAbove": [
                                    1
                                ]
                            },
                            {
                                "IntAboveField": [
                                    "firstBaseToKeep",
                                    "first base"
                                ]
                            }
                        ]
                    },
                    "name": "Last base to keep:",
                    "value": "28",
                    "label": "Last base to keep:",
                    "type": "Number"
                }
            ],
            "type": "step"
        },
        {
            "id": "idPanel3",
            "name": "Convert to Sanger Scoring",
            "label": "Convert to Sanger Scoring",
            "properties": [
                {
                    "id": "FastxTrimmer_",
                    "isVisible": true,
                    "name": "This tool will convert quality scoring to Sanger scoring.",
                    "label": "This tool will convert quality scoring to Sanger scoring.",
                    "type": "Info"
                },
                {
                    "id": "FastxTrimmer_qualityScoresType",
                    "isVisible": true,
                    "validator": {
                        "id": "",
                        "name": "",
                        "label": "",
                        "required": true,
                        "rules": [
                            {
                                "MustContain": [
                                    "Illumina 1.3+",
                                    "Sanger PHRED 33 (SRA)",
                                    "Solexa"
                                ]
                            }
                        ]
                    },
                    "name": "My sequence reads are the following scoring type:",
                    "label": "My sequence reads are the following scoring type:",
                    "type": "Selection"
                }
            ],
            "type": "step"
        }
    ]
}