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- [ec2-user@ip-10-47-238-23 sequoia]$ echo balance-stnz-test | python sequoia/report/heatmaps/run.py
- No configs found; falling back on auto-configuration
- INFO:mrjob.conf:No configs found; falling back on auto-configuration
- Creating temp directory /tmp/run.ec2-user.20180323.045057.034259
- INFO:mrjob.runner:Creating temp directory /tmp/run.ec2-user.20180323.045057.034259
- Running step 1 of 2...
- INFO:mrjob.sim:Running step 1 of 2...
- reading from STDIN
- INFO:mrjob.runner:reading from STDIN
- INFO:root:sequoia.report.heatmaps.yield_grid_stands: job: balance-stnz-test
- INFO:root:Cache Hit! balance-stnz-test/_cache/sequoia.report.heatmaps/yield_grid_stands/balance-stnz-test.txt
- INFO:root:sequoia.report.heatmaps.rasterize_grid: grid: -1716_180
- INFO:root:Executing command: cd /opt/sequoia && python -m sequoia.report.heatmaps.scripts.rasterize_grid --key_file /mnt/vol/sequoia.report.heatmaps.scripts.rasterize_grid.key.29b263fa-a3a3-40a5-afb8-bcd3f5b0b9a0.txt --value_file /mnt/vol/sequoia.report.heatmaps.scripts.rasterize_grid.value.4820d071-3415-41cb-b33b-0d3efe10eab9.txt --out_file /mnt/vol/sequoia.report.heatmaps.scripts.rasterize_grid.output.c17dad6f-8116-42f2-b8ca-7d6d81c937bc.txt
- Traceback (most recent call last):
- File "sequoia/report/heatmaps/run.py", line 46, in <module>
- ReportHeatmaps.run()
- File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 439, in run
- mr_job.execute()
- File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 460, in execute
- super(MRJob, self).execute()
- File "/usr/lib/python2.7/dist-packages/mrjob/launch.py", line 161, in execute
- self.run_job()
- File "/usr/lib/python2.7/dist-packages/mrjob/launch.py", line 231, in run_job
- runner.run()
- File "/usr/lib/python2.7/dist-packages/mrjob/runner.py", line 476, in run
- self._run()
- File "/usr/lib/python2.7/dist-packages/mrjob/sim.py", line 198, in _run
- self._invoke_step(step_num, 'reducer')
- File "/usr/lib/python2.7/dist-packages/mrjob/sim.py", line 272, in _invoke_step
- working_dir, env)
- File "/usr/lib/python2.7/dist-packages/mrjob/inline.py", line 154, in _run_step
- child_instance.execute()
- File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 454, in execute
- self.run_reducer(self.options.step_num)
- File "/usr/lib/python2.7/dist-packages/mrjob/job.py", line 569, in run_reducer
- for out_key, out_value in reducer(key, values) or ():
- File "/usr/lib/python2.7/dist-packages/drjob/master.py", line 303, in function
- self.run_docker_cmd()
- File "/usr/lib/python2.7/dist-packages/drjob/master.py", line 239, in run_docker_cmd
- return docker.run_cmd(self.make_docker_cmd(), timeout=self.timeout)
- File "/usr/lib/python2.7/dist-packages/drjob/utils/docker.py", line 54, in run_cmd
- raise Exception(str(errs))
- Exception: INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/S407Mario01.json' to '/tmp/tmpfOpp5S/tmpApQPHW/S407Mario01.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/S409Mario01.json' to '/tmp/tmpfOpp5S/tmpBroiOT/S409Mario01.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS269.json' to '/tmp/tmpfOpp5S/tmpkPLfyu/STANDS269.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS289.json' to '/tmp/tmpfOpp5S/tmptsJ2XV/STANDS289.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS293.json' to '/tmp/tmpfOpp5S/tmpAiSfwI/STANDS293.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS303.json' to '/tmp/tmpfOpp5S/tmpH0dPna/STANDS303.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS305.json' to '/tmp/tmpfOpp5S/tmpHcP7CT/STANDS305.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS359.json' to '/tmp/tmpfOpp5S/tmpstRDh2/STANDS359.json'
- INFO:drjob.utils.s3:Downloading u's3://silviaterra-sequoia/balance-stnz-test/output/trees/-1708.50_184.50/STANDS459.json' to '/tmp/tmpfOpp5S/tmpyeXrlg/STANDS459.json'
- /usr/local/lib/python2.7/dist-packages/rasterio/__init__.py:99: FutureWarning: GDAL-style transforms are deprecated and will not be supported in Rasterio 1.0.
- transform = guard_transform(transform)
- Traceback (most recent call last):
- File "/usr/lib/python2.7/runpy.py", line 174, in _run_module_as_main
- "__main__", fname, loader, pkg_name)
- File "/usr/lib/python2.7/runpy.py", line 72, in _run_code
- exec code in run_globals
- File "/opt/sequoia/sequoia/report/heatmaps/scripts/rasterize_grid.py", line 165, in <module>
- RasterizeGrid().run()
- File "/usr/local/lib/python2.7/dist-packages/drjob/slave.py", line 72, in run
- io.write_lines(self.out_file, self.process())
- File "/usr/local/lib/python2.7/dist-packages/drjob/utils/io.py", line 29, in write_lines
- for v in get_iterable(values):
- File "/opt/sequoia/sequoia/report/heatmaps/scripts/rasterize_grid.py", line 144, in run
- for fn in minigrid_heatmap_fns:
- File "/opt/sequoia/sequoia/report/heatmaps/scripts/rasterize_grid.py", line 108, in make_minigrid_heatmaps
- os.path.join(out_dir, '{}.tif'.format(img_type))
- File "/opt/sequoia/sequoia/report/heatmaps/scripts/rasterize_grid.py", line 37, in offset_vals_to_rast
- with rasterio.open(output_fn, 'w', **template.profile) as dst:
- File "/usr/local/lib/python2.7/dist-packages/rasterio/__init__.py", line 123, in open
- s.start()
- File "rasterio/_io.pyx", line 1346, in rasterio._io.RasterUpdater.start (rasterio/_io.c:19049)
- ValueError: Given nodata value, -3.40282346639e+38, is beyond the valid range of its data type, float32.
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