html:

 <div class="row">
    <div class="col-sm-3">
        <div class="form-group">
            <label class="control-label" for="product_name">Nombre</label>
            <input type="text" id="Nombre" name="product_name" value="" placeholder="Nombre" class="form-control" disabled="true">
            <div class="i-checks"><label> <input id="checkbox-Nombre" type="checkbox">&nbsphabilitar busqueda por Nombre</label></div>
        </div>
    </div>
    <div class="col-sm-3">
        <div class="form-group">
            <label class="control-label" for="product_name">Documento</label>
            <input type="text" id="Documento" name="product_name" value="" placeholder="Nombre" class="form-control" disabled="true">
            <div class="i-checks"><label> <input id="checkbox-Documento" type="checkbox">&nbsphabilitar busqueda por documento</label></div>
        </div>
    </div>
    <div class="col-sm-3">
        <div class="form-group">
            <label class="control-label" for="status">Estado</label>
            <select name="status" id="Estado" class="form-control" disabled="true">
                <option value="0" selected>Todos</option>
                <option value="1">Activo</option>
                <option value="2">Inactivo</option>
            </select>
            <div class="i-checks"><label> <input id="checkbox-Estado" type="checkbox">&nbsphabilitar busqueda por estado</label></div>
        </div>
    </div>
    <div class="col-sm-3">
        <div class="form-group">
            <label class="control-label" for="product_name">Correo electronico</label>
            <input type="text" id="email" name="product_name" value="" placeholder="Nombre cuenta" class="form-control" disabled="true">
             <div class="i-checks"><label> <input id="checkbox-email" type="checkbox">&nbsphabilitar busqueda correo</label></div>
        </div>
    </div>
</div>
<div class="row">
    <div class="col-sm-3">
        <div class="form-group">
            <label class="control-label" for="product_name"></label>
            <input type="button" id="button-filter" name="button-filter" value="Filtrar" placeholder="Filtrar" class="btn btn-primary" disabled="true">

        </div>
    </div>
</div>

  JS:

<script type="text/javascript">
  document.getElementById('checkbox-email').onchange = function() {
      document.getElementById('email').disabled = !this.checked;
      disableFilter();
  };
  document.getElementById('checkbox-Estado').onchange = function() {
      document.getElementById('Estado').disabled = !this.checked;
      disableFilter();
  };
  document.getElementById('checkbox-Documento').onchange = function() {
      document.getElementById('Documento').disabled = !this.checked;
      disableFilter();
  };
  document.getElementById('checkbox-Nombre').onchange = function() {
      document.getElementById('Nombre').disabled = !this.checked;
      disableFilter();
  };

  function disableFilter(){
      if(document.getElementById('email').disabled && document.getElementById('Estado').disabled
          && document.getElementById('Documento').disabled && document.getElementById('Nombre').disabled){
          document.getElementById('button-filter').disabled = true;
          console.log(document.getElementById('button-filter').disabled);
      } else {
          document.getElementById('button-filter').disabled = false;
      }
  }
</script>