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R sushi

Jul 9th, 2019
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R 0.46 KB | None | 0 0
  1. library(Sushi)
  2.  
  3. g1 <- read.delim("genes1.bed")
  4. g1$strand <- as.character(g1$strand)
  5.  
  6. p1 = plotGenes(g1, chrom = "region_[1_16742]", chromstart = 900, chromend = 16000,
  7.                plotgenetype="arrow",
  8.                bentline=F, arrowlength = 0.025, packrow = T,
  9.                bheight = 0.04, labeloffset = 0.08,
  10.                wigglefactor = 0.001)
  11. labelgenome(chrom = "region_[1_16742]", chromstart = 900, chromend = 16000, n=10, scale="bp", pos = 0.9)
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