Tips
Even though planting Magic Beans in soil will help gain access to different areas, there is another use for the soil. Link can bottle some Bugs and drop them into the soil. This will result in a Gold Skulltula jumping out.[5][6] This can be done even after a bean is planted.
Here are the locations of soil Link can plant magic beans in Ocarina of Time:
Right next to the magic bean salesman.
In the Lost Woods, in the area with the bridge connecting Kokiri Forest and Hyrule Field.
Again in the Lost Woods, near the area with the Forest Stage.
In Kokiri Forest near the shop.
Right next to the warp platform in the Death Mountain crater.
At the bottom of Gerudo Valley on the small cliff next to the cow.
Outside the Lakeside Laboratory in Lake Hylia.
Next to the entrance to Dodongo's Cavern.
Next to the entrance of the Spirit Temple.
In the Kakariko Graveyard.