API tools faq
paste
Advertisement
Guest User

scalapack errors

a guest
Sep 26th, 2012
362
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 8.78 KB | None | 0 0
raw download clone embed print report
  1. #This compiled and runs a C example just fine
  2. mpif77 -Wall t1.c -o ex1 /usr/lib64/openmpi/lib/libscalapack.a /usr/lib64/openmpi/lib/libmpiblacs.a /usr/lib64/openmpi/lib/libmpiblacsCinit.a /usr/lib64/openmpi/lib/libmpiblacsF77init.a
  3.  
  4. #with C++ , note this is a C++ example from the web and it is not using the depreciated MPI C++ syntax rather the standard C syntax
  5.  
  6. mpif77 -Wall ex3.cpp -o ex3 /usr/lib64/openmpi/lib/libscalapack.a /usr/lib64/openmpi/lib/libmpiblacs.a /usr/lib64/openmpi/lib/libmpiblacsCinit.a /usr/lib64/openmpi/lib/libmpiblacsF77init.a -llapack -lblas -lm -lgfortran /usr/lib64/openmpi/lib/libmpiblacs.a -lstdc++
  7.  
  8. /tmp/ccHwpoGA.o: In function `MPI::Intracomm::Intracomm()':
  9. ex3.cpp:(.text._ZN3MPI9IntracommC2Ev[_ZN3MPI9IntracommC5Ev]+0x14): undefined reference to `MPI::Comm::Comm()'
  10. /tmp/ccHwpoGA.o: In function `MPI::Intracomm::Intracomm(ompi_communicator_t*)':
  11. ex3.cpp:(.text._ZN3MPI9IntracommC2EP19ompi_communicator_t[_ZN3MPI9IntracommC5EP19ompi_communicator_t]+0x19): undefined reference to `MPI::Comm::Comm()'
  12. /tmp/ccHwpoGA.o: In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)':
  13. ex3.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x24): undefined reference to `ompi_mpi_cxx_op_intercept'
  14. /tmp/ccHwpoGA.o:(.rodata._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()'
  15. /tmp/ccHwpoGA.o:(.rodata._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()'
  16. collect2: error: ld returned 1 exit status
  17.  
  18. #with Mpic++
  19. mpic++ -Wall ex3.cpp -o ex3 /usr/lib64/openmpi/lib/libscalapack.a /usr/lib64/openmpi/lib/libmpiblacs.a /usr/lib64/openmpi/lib/libmpiblacsCinit.a /usr/lib64/openmpi/lib/libmpiblacsF77init.a -llapack -lblas -lm -lgfortran /usr/lib64/openmpi/lib/libmpiblacs.a -lstdc++
  20.  
  21. /usr/lib64/openmpi/lib/libmpiblacs.a(dgesd2d_.oo): In function `Cdgesd2d':
  22. (.text+0x8e): undefined reference to `mpi_type_free_'
  23. /usr/lib64/openmpi/lib/libmpiblacs.a(dgerv2d_.oo): In function `Cdgerv2d':
  24. (.text+0x93): undefined reference to `mpi_type_free_'
  25. /usr/lib64/openmpi/lib/libmpiblacs.a(dgebs2d_.oo): In function `Cdgebs2d':
  26. (.text+0x133): undefined reference to `mpi_type_free_'
  27. /usr/lib64/openmpi/lib/libmpiblacs.a(dgebs2d_.oo): In function `Cdgebs2d':
  28. (.text+0x2ea): undefined reference to `mpi_bcast_'
  29. /usr/lib64/openmpi/lib/libmpiblacs.a(dgebr2d_.oo): In function `Cdgebr2d':
  30. (.text+0x13b): undefined reference to `mpi_type_free_'
  31. /usr/lib64/openmpi/lib/libmpiblacs.a(dgebr2d_.oo): In function `Cdgebr2d':
  32. (.text+0x2fb): undefined reference to `mpi_bcast_'
  33. /usr/lib64/openmpi/lib/libmpiblacs.a(dgsum2d_.oo): In function `Cdgsum2d':
  34. (.text+0x45a): undefined reference to `mpi_reduce_'
  35. /usr/lib64/openmpi/lib/libmpiblacs.a(dgsum2d_.oo): In function `Cdgsum2d':
  36. (.text+0x4e5): undefined reference to `mpi_allreduce_'
  37. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridmap_.oo): In function `Cblacs_gridmap':
  38. (.text+0x2dc): undefined reference to `mpi_comm_dup_'
  39. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridmap_.oo): In function `Cblacs_gridmap':
  40. (.text+0x2f0): undefined reference to `mpi_comm_rank_'
  41. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridmap_.oo): In function `Cblacs_gridmap':
  42. (.text+0x31f): undefined reference to `mpi_comm_split_'
  43. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridmap_.oo): In function `Cblacs_gridmap':
  44. (.text+0x33c): undefined reference to `mpi_comm_split_'
  45. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridexit_.oo): In function `Cblacs_gridexit':
  46. (.text+0x56): undefined reference to `mpi_comm_free_'
  47. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridexit_.oo): In function `Cblacs_gridexit':
  48. (.text+0x64): undefined reference to `mpi_comm_free_'
  49. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridexit_.oo): In function `Cblacs_gridexit':
  50. (.text+0x71): undefined reference to `mpi_comm_free_'
  51. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_gridexit_.oo): In function `Cblacs_gridexit':
  52. (.text+0x7f): undefined reference to `mpi_comm_free_'
  53. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_barrier_.oo): In function `Cblacs_barrier':
  54. (.text+0x4a): undefined reference to `mpi_barrier_'
  55. /usr/lib64/openmpi/lib/libmpiblacs.a(Cblacs_barrier_.oo): In function `Cblacs_barrier':
  56. (.text+0x62): undefined reference to `mpi_barrier_'
  57. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Ssend.o): In function `BI_Ssend':
  58. (.text+0x32): undefined reference to `mpi_send_'
  59. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Srecv.o): In function `BI_Srecv':
  60. (.text+0x41): undefined reference to `mpi_recv_'
  61. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Asend.o): In function `BI_Asend':
  62. (.text+0x56): undefined reference to `mpi_isend_'
  63. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Asend.o): In function `BI_Asend':
  64. (.text+0x86): undefined reference to `mpi_error_class_'
  65. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Asend.o): In function `BI_Asend':
  66. (.text+0x101): undefined reference to `mpi_isend_'
  67. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Arecv.o): In function `BI_Arecv':
  68. (.text+0x56): undefined reference to `mpi_irecv_'
  69. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Arecv.o): In function `BI_Arecv':
  70. (.text+0x86): undefined reference to `mpi_error_class_'
  71. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Arecv.o): In function `BI_Arecv':
  72. (.text+0x101): undefined reference to `mpi_irecv_'
  73. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_BeComb.o): In function `BI_BeComb':
  74. (.text+0x17e): undefined reference to `mpi_sendrecv_'
  75. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_BlacsAbort.o): In function `BI_BlacsAbort':
  76. (.text+0x3f): undefined reference to `mpi_abort_'
  77. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_BuffIsFree.o): In function `BI_BuffIsFree':
  78. (.text+0x60): undefined reference to `mpi_waitall_'
  79. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Pack.o): In function `BI_Pack':
  80. (.text+0x76): undefined reference to `mpi_pack_'
  81. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Pack.o): In function `BI_Pack':
  82. (.text+0xe0): undefined reference to `mpi_pack_size_'
  83. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_GetMpiGeType.o): In function `BI_GetMpiGeType':
  84. (.text+0x38): undefined reference to `mpi_type_vector_'
  85. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_GetMpiGeType.o): In function `BI_GetMpiGeType':
  86. (.text+0x47): undefined reference to `mpi_type_commit_'
  87. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_MPI_F77_to_c_trans_comm.o): In function `BI_MPI_F77_to_c_trans_comm':
  88. (.text+0x27): undefined reference to `mpi_comm_size_'
  89. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_MPI_F77_to_c_trans_comm.o): In function `BI_MPI_F77_to_c_trans_comm':
  90. (.text+0x4c): undefined reference to `mpi_comm_group_'
  91. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_MPI_F77_to_c_trans_comm.o): In function `BI_MPI_F77_to_c_trans_comm':
  92. (.text+0x65): undefined reference to `mpi_comm_group_'
  93. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_MPI_F77_to_c_trans_comm.o): In function `BI_MPI_F77_to_c_trans_comm':
  94. (.text+0xa3): undefined reference to `mpi_group_translate_ranks_'
  95. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_MPI_F77_to_c_trans_comm.o): In function `BI_MPI_F77_to_c_trans_comm':
  96. (.text+0xc3): undefined reference to `mpi_group_free_'
  97. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_MPI_F77_to_c_trans_comm.o): In function `BI_MPI_F77_to_c_trans_comm':
  98. (.text+0xd2): undefined reference to `mpi_group_free_'
  99. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_TransUserComm.o): In function `BI_TransUserComm':
  100. (.text+0xab): undefined reference to `mpi_comm_group_'
  101. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_TransUserComm.o): In function `BI_TransUserComm':
  102. (.text+0xc7): undefined reference to `mpi_group_incl_'
  103. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_TransUserComm.o): In function `BI_TransUserComm':
  104. (.text+0xe0): undefined reference to `mpi_comm_create_'
  105. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_TransUserComm.o): In function `BI_TransUserComm':
  106. (.text+0xef): undefined reference to `mpi_group_free_'
  107. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_TransUserComm.o): In function `BI_TransUserComm':
  108. (.text+0xfe): undefined reference to `mpi_group_free_'
  109. /usr/lib64/openmpi/lib/libmpiblacs.a(bi_f77_mpi_attr_get.o): In function `bi_f77_mpi_attr_get_':
  110. (.text+0x13): undefined reference to `mpi_attr_get_'
  111. /usr/lib64/openmpi/lib/libmpiblacs.a(bi_f77_mpi_testall.o): In function `bi_f77_mpi_testall_':
  112. (.text+0x13): undefined reference to `mpi_testall_'
  113. /usr/lib64/openmpi/lib/libmpiblacs.a(dwalltime00_.o): In function `dwalltime00_':
  114. (.text+0x7): undefined reference to `mpi_wtime_'
  115. /usr/lib64/openmpi/lib/libmpiblacs.a(BI_Rsend.o): In function `BI_Rsend':
  116. (.text+0x32): undefined reference to `mpi_rsend_'
  117. /usr/lib64/openmpi/lib/libmpiblacsCinit.a(Cblacs_pinfo.o): In function `Cblacs_pinfo':
  118. (.text+0xda): undefined reference to `mpi_comm_size_'
  119. /usr/lib64/openmpi/lib/libmpiblacsCinit.a(Cblacs_pinfo.o): In function `Cblacs_pinfo':
  120. (.text+0xf6): undefined reference to `mpi_comm_rank_'
  121. collect2: error: ld returned 1 exit status
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!