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Jukkart
Mar 17th, 2018
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  1. ed">
  2. ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
  3. ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
  4. ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
  5. ##FORMAT=<ID=AB,Number=1,Type=Float,Description="Ratio of genotype allelic depths for heterozygous variants">
  6. ##FORMAT=<ID=SR,Number=1,Type=Float,Description="Ratio of reads supporting genotype that are on the forward strand">
  7. ##FORMAT=<ID=BQ,Number=1,Type=Integer,Description="RMS Phred-scaled base quality of supporting reads at variant position">
  8. ##FORMAT=<ID=LowMQ,Number=.,Type=Integer,Description="Number of reads with MQ<=10 for the ref and alt alleles in the order listed">
  9. ##FORMAT=<ID=ClipCnt,Number=.,Type=Integer,Description="Number of reads with clipping for the ref and alt alleles in the order listed">
  10. ##FORMAT=<ID=ReadOffset,Number=.,Type=Float,Description="Average offset to variant position in reads supporting the ref and alt alleles in the order listed">
  11. ##FORMAT=<ID=RAD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed, for reverse-strand reads only">
  12. ##FORMAT=<ID=AS,Number=.,Type=Float,Description="Allele support scores for the ref and alt alleles in the order listed">
  13. ##INFO=<ID=BQ,Number=1,Type=Float,Description="RMS Phred-scaled base quality of supporting reads at variant position">
  14. ##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
  15. ##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
  16. ##INFO=<ID=HR,Number=1,Type=Float,Description="RMS Weighted Homopolymer Rate of all reads">
  17. ##INFO=<ID=HL,Number=1,Type=Integer,Description="Longest Homopolymer run adjacent to position across all reads">
  18. ##INFO=<ID=IndelCnt,Number=1,Type=Float,Description="RMS number of indels near variant position across all reads">
  19. ##INFO=<ID=MismatchCnt,Number=1,Type=Float,Description="RMS number of mismatches near variant position across all reads">
  20. ##INFO=<ID=GC,Number=1,Type=Float,Description="GC content of all reads at the variant position">
  21. ##contig=<ID=chrY,length=57227415,assembly=ucsc.hg38>
  22. ##contig=<ID=chrY_KI270740v1_random,length=37240,assembly=ucsc.hg38>
  23. #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 936c2f92-8a3e-46c8-a025-cefb5575d08e
  24. chrY 2781435 . A T 24.0518 QUAL=24.051765 BQ=37;GC=0.498278;HL=2;HR=1.5;IndelCnt=0;MQ=49.0663;MQ0=0;MismatchCnt=1 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 1/1:0,6:6:9:86,84,0:1:0.5:37:0,2:0,0:0,72.6667:0,3:0,5.9988
  25. chrY 2781439 . C G 20.336 QUAL=20.336002 BQ=37;GC=0.502778;HL=1;HR=1;IndelCnt=0;MQ=53.6302;MQ0=0;MismatchCnt=1 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 1/1:0,5:6:7:68,65,0:1:0.4:37:0,1:0,0:0,67:0,3:0,4.999
  26. chrY 2781653 . G . 10.9479 DP=1;GTL=0.905585;QUAL=10.947855 BQ=37;GC=0.602649;HL=2;HR=2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:1:1:0:0:0:0:37:0:0:53:1:0.999799
  27. chrY 2781655 . C . 10.9479 DP=1;GTL=0.905585;QUAL=10.947855 BQ=37;GC=0.602649;HL=2;HR=2.2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:1:1:0:0:0:0:37:0:0:51:1:0.999799
  28. chrY 2781760 . T A 11.4931 DP=1;GTL=0.905585;QUAL=11.493107 BQ=37;GC=0.355072;HL=26;HR=227;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=1 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 1/1:0,1:1:1:5,4,0:1:0:37:0,0:0,0:0,104:0,1:0,0.999799
  29. chrY 2781815 . G . 19.7553 QUAL=19.755333 BQ=37;GC=0.35748;HL=3;HR=2.6;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:5:5:0:0:0:0.6:37:0:0:33.6:2:4.999
  30. chrY 2781922 . T G 1484.13 PASS BQ=34.8243;GC=0.389862;HL=2;HR=1.9769;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.164399 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:36,1:38:0:0,500,500:0:0.583333:37:0,0:0,0:76.5833,41:15,0:35.9945,0.997381
  31. chrY 2781930 . A G 1140.93 PASS BQ=32.3762;GC=0.390619;HL=5;HR=8.80831;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.162221 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:36,2:38:0:0,474,474:0:0.583333:32:0,0:0,0:77.2222,89:15,1:35.9785,2.00681
  32. chrY 2781958 . C A 1484.13 PASS BQ=37;GC=0.413256;HL=2;HR=1.03411;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.258199 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:44,1:45:0:0,500,500:0:0.545455:37:0,0:1,0:76.5,17:20,0:43.9912,1.00273
  33. chrY 2781961 . C A 1484.13 PASS BQ=37;GC=0.413256;HL=2;HR=1.05409;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.258199 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:43,2:45:0:0,500,500:0:0.55814:37:0,0:1,0:75.6977,71.5:19,1:42.9915,2.00246
  34. chrY 2781977 . C G 1484.13 PASS BQ=33.8905;GC=0.425156;HL=7;HR=12.6235;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:45,1:46:0:0,500,500:0:0.533333:35:0,0:1,0:68.8889,14:21,0:44.9878,0.999584
  35. chrY 2782047 . C A 1484.13 PASS BQ=37;GC=0.428671;HL=2;HR=1.48806;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.140028 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:49,2:51:0:0,500,500:0:0.469388:37:0,0:2,0:69.7755,67:26,1:48.9903,2.00286
  36. chrY 2782063 . C A 1484.13 PASS BQ=37;GC=0.423945;HL=3;HR=2.53409;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:41,2:43:0:0,500,500:0:0.487805:37:0,0:1,1:71.8293,106:21,1:40.9919,2.00233
  37. chrY 2782138 . T G 1484.13 PASS BQ=34.9945;GC=0.378432;HL=2;HR=1.50406;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:40,1:41:0:0,500,500:0:0.45:37:0,0:1,0:60.775,48:22,1:39.9936,0.997647
  38. chrY 2782224 . A . 463.691 PASS BQ=33.7907;GC=0.320968;HL=2;HR=1.98357;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:22:22:0:0:0:0.454545:33:0:0:70.1818:12:21.9908
  39. chrY 2782305 . C A 31.5523 QUAL=31.552321 BQ=37;GC=0.286682;HL=6;HR=7.604;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:13,2:15:0:0,112,115:0:0.461538:37:0,0:0,0:86.3077,74:7,1:12.9975,2.00046
  40. chrY 2782330 . G . 58.7996 PASS BQ=37;GC=0.283988;HL=7;HR=13.75;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:11:12:0:0:0:0.363636:37:0:0:79.0909:7:10.9978
  41. chrY 2782501 . G . 48.8068 PASS BQ=37;GC=0.285814;HL=3;HR=3.75;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:10:10:0:0:0:0.6:37:0:0:77:4:9.99799
  42. chrY 2782531 . T A 39.4838 PASS BQ=32.2209;GC=0.287765;HL=4;HR=5.82996;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:11,1:12:0:0,136,137:0:0.636364:37:0,0:0,1:57.0909,9:4,0:10.9995,0.995719
  43. chrY 2782660 . G . 559.548 PASS BQ=33.8905;GC=0.361585;HL=3;HR=4.40326;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:23:25:0:0:0:0.695652:33:0:2:70.1739:7:22.9906
  44. chrY 2782741 . C A 1484.13 PASS BQ=37;GC=0.393469;HL=3;HR=2.06027;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.140028 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:49,2:51:0:0,500,500:0:0.489796:37:0,0:3,0:87.898,46.5:25,1:48.9903,2.00286
  45. chrY 2782745 . G T 1484.13 PASS BQ=35.2353;GC=0.394216;HL=2;HR=1.01294;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.25 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:47,1:49:0:0,500,500:0:0.489362:37:0,0:2,1:82.9787,62:24,1:46.9922,0.998113
  46. chrY 2782748 . G T 1484.13 PASS BQ=33.984;GC=0.39419;HL=4;HR=4.03694;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.144338 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:47,1:49:0:0,500,500:0:0.489362:35:0,0:2,1:82.8298,59:24,1:46.9874,0.999717
  47. chrY 2782762 . T C 1484.13 PASS BQ=35.4476;GC=0.394943;HL=3;HR=1.56629;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:54,2:56:0:0,500,500:0:0.518519:35:0,0:4,0:73.6852,104.5:26,1:53.9845,2.00479
  48. chrY 2782773 . C A 1484.13 PASS BQ=34.2326;GC=0.395204;HL=3;HR=4.46079;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:53,1:54:0:0,500,500:0:0.490566:34:0,0:3,1:70.3585,13:27,0:52.9798,1.00653
  49. chrY 2782812 . G . 1484.13 PASS BQ=34.2326;GC=0.393489;HL=2;HR=1.42048;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:54:55:0:0:0:0.537037:34:0:1:65.8519:25:53.9795
  50. chrY 2782848 . T C 1484.13 PASS BQ=34.9546;GC=0.39105;HL=4;HR=2.43803;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:39,1:42:0:0,500,500:0:0.487179:34:0,0:1,0:64.9744,49:20,0:38.9874,1.004
  51. chrY 2782864 . C A 1484.13 PASS BQ=33.1699;GC=0.40533;HL=3;HR=2.56477;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:49,2:52:0:0,500,500:0:0.55102:33:0,0:1,0:62.7551,38:22,1:48.9759,2.00767
  52. chrY 2782877 . C A 1484.13 PASS BQ=37;GC=0.423947;HL=2;HR=3.16405;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:66,1:68:0:0,500,500:0:0.530303:37:0,0:1,0:64.0909,119:31,0:65.9868,1.00419
  53. chrY 2782922 . T C 1484.13 PASS BQ=37;GC=0.449576;HL=3;HR=2.85255;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.125 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:63,1:65:0:0,500,500:0:0.52381:37:0,0:1,0:74.3492,60:30,0:62.9874,1.00399
  54. chrY 2782964 . G T 1484.13 PASS BQ=35.6674;GC=0.485812;HL=3;HR=1.51613;IndelCnt=0;MQ=59.751;MQ0=0;MismatchCnt=0.244339 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:66,1:67:0:0,500,500:0:0.439394:37:0,0:3,0:78.5,55:37,1:65.9884,0.999377
  55. chrY 2782982 . C A 1484.13 PASS BQ=34.505;GC=0.495575;HL=2;HR=1.8775;IndelCnt=0;MQ=59.7308;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:60,2:62:0:0,500,500:0:0.433333:34:0,0:3,0:78.6333,112.5:34,1:59.9785,2.0068
  56. chrY 2782986 . C . 1484.13 PASS BQ=34.474;GC=0.496012;HL=3;HR=3.77695;IndelCnt=0;MQ=59.7264;MQ0=0;MismatchCnt=0.181071 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:61:62:0:0:0:0.42623:34:0:3:78.6885:35:60.9781
  57. chrY 2783013 . C A 1484.13 PASS BQ=35.265;GC=0.507505;HL=3;HR=2.68107;IndelCnt=0;MQ=59.6592;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:48,1:50:0:0,500,500:0:0.375:35:0,0:3,0:74.9583,12:30,1:47.9856,1.0046
  58. chrY 2783024 . A G 1484.13 PASS BQ=34.9945;GC=0.515636;HL=3;HR=3.10603;IndelCnt=0;MQ=59.5925;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:39,2:41:0:0,500,500:0:0.333333:34:0,0:1,2:71.8974,64:26,1:38.9875,2.00378
  59. chrY 2783029 . T C 362.552 PASS BQ=37;GC=0.529034;HL=2;HR=1.6752;IndelCnt=0;MQ=59.4605;MQ0=0;MismatchCnt=0.254 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:29,2:31:0:0,359,359:0:0.275862:36:0,0:1,2:69.7241,64:21,1:28.9943,2.00151
  60. chrY 2783031 . G A 361.827 PASS BQ=34.505;GC=0.529034;HL=2;HR=2.15807;IndelCnt=0;MQ=59.4605;MQ0=0;MismatchCnt=0.254 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:29,2:31:0:0,359,359:0:0.275862:34:0,0:1,2:68.8276,64:21,1:28.9895,2.00312
  61. chrY 2783039 . C T 118.654 PASS BQ=37;GC=0.543849;HL=3;HR=2.71451;IndelCnt=0;MQ=59.3022;MQ0=0;MismatchCnt=0.288675 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:22,2:24:0:0,247,247:0:0.181818:36:0,0:0,2:57.6818,64:18,1:21.9957,2.00105
  62. chrY 2783040 . A G 118.654 PASS BQ=37;GC=0.543849;HL=3;HR=2.41745;IndelCnt=0;MQ=59.3022;MQ0=0;MismatchCnt=0.288675 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:22,2:24:0:0,247,247:0:0.181818:36:0,0:0,2:57.0455,64:18,1:21.9957,2.00105
  63. chrY 2783046 . C A 86.9264 PASS BQ=33.7907;GC=0.545656;HL=2;HR=1.44118;IndelCnt=0;MQ=59.2383;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:20,2:23:0:0,216,216:0:0.15:33:0,0:0,2:48.9,64:17,1:19.9913,2.00252
  64. chrY 2783278 . A AAA 14.0303 GTL=2.698209;QUAL=14.030305 BQ=37;GC=0.337317;HL=20;HR=119.456;IndelCnt=0.632456;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/1:3,2:5:6:5,0,20:0.6:0.4:37:0,0:1,0:83.6667,84.5:2,1:2.9994,1.9996
  65. chrY 2783330 . A G 46.1454 PASS BQ=32.4498;GC=0.357253;HL=4;HR=12.5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:12,1:14:0:0,152,153:0:0.5:32:0,0:1,0:66.25,101:6,1:11.9928,1.0022
  66. chrY 2783336 . C A 54.2984 PASS BQ=32.656;GC=0.358706;HL=4;HR=3.38707;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:13,1:14:0:0,168,169:0:0.538462:32:0,0:1,0:70.3077,95:6,1:12.9926,1.00227
  67. chrY 2783419 . C A 138.771 PASS BQ=37;GC=0.349129;HL=4;HR=5.7046;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:23,2:25:0:0,263,263:0:0.478261:36:0,0:0,0:64.5217,105:12,1:22.9955,2.00113
  68. chrY 2783591 . T . 48.7035 PASS BQ=31.6767;GC=0.30904;HL=3;HR=3.8;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:10:11:0:0:0:0.7:31:0:0:53.2:3:9.99318
  69. chrY 2783609 . A . 70.7388 PASS BQ=32.2209;GC=0.306612;HL=3;HR=3.2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:12:12:0:0:0:0.583333:32:0:0:68.8333:5:11.9928
  70. chrY 2783624 . T . 70.8994 PASS BQ=37;GC=0.306612;HL=2;HR=2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:12:12:0:0:0:0.583333:37:0:0:71.3333:5:11.9976
  71. chrY 2783799 . A T 18.9764 QUAL=18.976387 BQ=30.5277;GC=0.273899;HL=2;HR=1.5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:6,1:8:0:0,57,64:0:0.333333:37:0,0:0,0:48.3333,8:4,1:6.00047,0.995386
  72. chrY 2784077 . C A 75.7788 PASS BQ=37;GC=0.469864;HL=2;HR=1.5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:15,1:16:0:0,202,203:0:0.6:36:0,0:2,0:70.4,32:6,0:14.9971,1.0008
  73. chrY 2784252 . C A 1484.13 PASS BQ=34.8696;GC=0.337312;HL=3;HR=3.87143;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.162221 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:75,1:78:0:0,500,500:0:0.466667:34:0,0:1,0:85.9067,34:40,0:74.9754,1.008
  74. chrY 2784255 . C A 1484.13 PASS BQ=37;GC=0.338927;HL=7;HR=3.28468;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.2 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:73,2:78:0:0,500,500:0:0.452055:37:0,0:1,0:85.6986,85:40,1:72.9855,2.00445
  75. chrY 2784259 . C A 1484.13 PASS BQ=37;GC=0.336846;HL=7;HR=6.87689;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.166667 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:70,2:75:0:0,500,500:0:0.471429:37:0,0:1,0:83.3286,85:37,1:69.9861,2.00425
  76. chrY 2784368 . C A 972.227 PASS BQ=37;GC=0.391905;HL=2;HR=2.67232;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:35,2:37:0:0,458,458:0:0.314286:37:0,0:1,0:63.5143,52.5:24,1:34.9931,2.00193
  77. chrY 2784596 . G . 985.749 PASS BQ=37;GC=0.308683;HL=3;HR=2.58364;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:26:27:0:0:0:0.384615:36:0:1:42.6154:16:25.9948
  78. chrY 2784981 . A G 1484.13 PASS BQ=35.1055;GC=0.293938;HL=3;HR=1.53379;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:43,1:45:0:0,500,500:0:0.465116:37:0,0:0,1:73.7674,23:23,0:42.993,0.997847
  79. chrY 2785019 . G . 1484.13 PASS BQ=37;GC=0.293718;HL=2;HR=2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:38:39:0:0:0:0.473684:37:0:1:78.3947:20:37.9924
  80. chrY 2785049 . A C 1210.22 PASS BQ=34.5648;GC=0.299658;HL=4;HR=6.87123;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:31,1:33:0:0,480,480:0:0.419355:36:0,0:0,0:68.7419,29:18,1:30.9955,0.997049
  81. chrY 2785100 . T . 1484.13 PASS BQ=34.4422;GC=0.293258;HL=4;HR=7.2431;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:30:30:0:0:0:0.533333:34:0:1:66.1:14:29.9892
  82. chrY 2785182 . T G 419.949 PASS BQ=34.1546;GC=0.286231;HL=2;HR=1.5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:25,1:27:0:0,374,374:0:0.56:34:0,0:0,0:75.24,81:11,1:24.9902,1.00307
  83. chrY 2785247 . A T 1484.13 PASS BQ=35.3484;GC=0.401513;HL=3;HR=3.77209;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:51,1:52:0:0,500,500:0:0.627451:37:0,0:1,0:59.098,45:19,1:50.9914,0.998379
  84. chrY 2785273 . C A 1484.13 PASS BQ=35.4706;GC=0.447276;HL=2;HR=2.28143;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:56,1:59:0:0,500,500:0:0.625:35:0,0:1,0:51.125,22:21,0:55.984,1.00513
  85. chrY 2785322 . C A 1484.13 PASS BQ=34.777;GC=0.480717;HL=4;HR=2.00202;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.136083 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:106,2:108:0:0,500,500:0:0.613208:34:0,0:6,0:73.6604,74:41,1:105.964,2.01146
  86. chrY 2785336 . C A 1484.13 PASS BQ=36.2925;GC=0.484805;HL=3;HR=2.3736;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:135,1:137:0:0,500,500:0:0.607407:36:0,0:6,0:70.9333,44:53,0:134.968,1.01038
  87. chrY 2785407 . C G 1484.13 PASS BQ=37;GC=0.478088;HL=2;HR=1.42232;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.128388 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:181,1:187:0:0,500,500:0:0.502762:36:0,0:6,1:80.1823,105:90,0:180.964,1.01184
  88. chrY 2785452 . C A 1484.13 PASS BQ=35.6926;GC=0.474215;HL=2;HR=1.00908;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0854358 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:135,2:138:0:0,500,500:0:0.437037:35:0,0:5,0:76.2815,82.5:76,1:134.963,2.01179
  89. chrY 2785459 . C A 1484.13 PASS BQ=35.6412;GC=0.473949;HL=2;HR=1.51179;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0873704 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:130,1:132:0:0,500,500:0:0.438462:35:0,0:3,0:76.3462,8:73,1:129.964,1.01165
  90. chrY 2785461 . C A 1484.13 PASS BQ=36.2728;GC=0.474049;HL=2;HR=1.50935;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0870388 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:131,1:132:0:0,500,500:0:0.435115:36:0,0:3,0:75.7176,103:74,0:130.969,1.01012
  91. chrY 2785483 . G A 1484.13 PASS BQ=36.0802;GC=0.471959;HL=5;HR=2.84922;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:100,2:103:0:0,500,500:0:0.39:36:0,0:3,0:78.38,92:61,1:99.9753,2.00785
  92. chrY 2785488 . C A 1484.13 PASS BQ=37;GC=0.471147;HL=5;HR=3.33975;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:96,1:97:0:0,500,500:0:0.354167:36:0,0:4,0:73.7083,53:62,1:95.9808,1.00618
  93. chrY 2785493 . C A 1484.13 PASS BQ=36.0287;GC=0.471053;HL=2;HR=1.00649;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:95,1:96:0:0,500,500:0:0.347368:36:0,0:4,0:70.5263,142:62,0:94.9762,1.00772
  94. chrY 2785585 . C A 1201.92 PASS BQ=34.5648;GC=0.474942;HL=5;HR=7.55139;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:31,1:33:0:0,479,479:0:0.483871:34:0,0:1,0:78.4516,42:16,1:30.989,1.00347
  95. chrY 2785600 . C A 1484.13 PASS BQ=34.6758;GC=0.461021;HL=3;HR=4.38886;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:33,1:34:0:0,500,500:0:0.393939:34:0,0:1,0:70.7879,26:20,1:32.9886,1.0036
  96. chrY 2785855 . C . 1484.13 PASS BQ=33.0136;GC=0.305322;HL=2;HR=1.5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:32:33:0:0:0:0.4375:33:0:0:76.75:18:31.984
  97. chrY 2786045 . T . 12.0805 GTL=1.890046;QUAL=12.080465 BQ=37;GC=0.229236;HL=3;HR=5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:2:2:0:0:0:0.5:37:0:0:95:1:1.9996
  98. chrY 2786221 . G . 28.1872 QUAL=28.187224 BQ=37;GC=0.411374;HL=2;HR=1.5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:7:7:0:0:0:0.428571:37:0:0:77.1429:4:6.9986
  99. chrY 2786292 . C . 103.224 PASS BQ=37;GC=0.342207;HL=2;HR=2.24531;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:14:14:0:0:0:0.5:36:0:0:54.8571:7:13.9972
  100. chrY 2786503 . C . 1484.13 PASS BQ=35.1397;GC=0.389071;HL=2;HR=1.49815;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:90:90:0:0:0:0.533333:35:0:1:85.6444:42:89.9723
  101. chrY 2786548 . A C 1484.13 PASS BQ=37;GC=0.395094;HL=2;HR=1.50579;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.101535 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:96,1:98:0:0,500,500:0:0.53125:36:0,0:1,0:82.6042,65:45,1:95.9808,1.00618
  102. chrY 2786584 . A G 1484.13 PASS BQ=35.2795;GC=0.394889;HL=3;HR=2.34248;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.142134 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:98,1:100:0:0,500,500:0:0.479592:35:0,0:0,0:80.0918,44:51,0:97.9708,1.00953
  103. chrY 2786601 . C A 1484.13 PASS BQ=37;GC=0.394813;HL=3;HR=3.79082;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.104257 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:91,1:93:0:0,500,500:0:0.417582:36:0,0:0,0:72.5055,22:53,1:90.9818,1.00585
  104. chrY 2786613 . C . 1484.13 PASS BQ=35.9503;GC=0.393785;HL=3;HR=1.53139;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.1066 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:88:89:0:0:0:0.340909:35:0:0:60.6023:58:87.9775
  105. chrY 2786652 . T A 1484.13 PASS BQ=35.265;GC=0.383203;HL=2;HR=1.47859;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:97,1:98:0:0,500,500:0:0.556701:35:0,0:0,0:66.2062,114:43,0:96.971,1.00946
  106. chrY 2786663 . T C 1484.13 PASS BQ=36.0636;GC=0.38283;HL=8;HR=33.3911;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:99,1:101:0:0,500,500:0:0.545455:36:0,0:0,0:67.6667,98:45,1:98.9818,1.00157
  107. chrY 2786693 . A G 1484.13 PASS BQ=37;GC=0.384245;HL=2;HR=1.51904;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:106,1:109:0:0,500,500:0:0.5:36:0,0:0,0:70.7925,52:53,0:105.979,1.00685
  108. chrY 2786698 . A G 1484.13 PASS BQ=36.0882;GC=0.384883;HL=3;HR=2.59096;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0985329 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:101,2:103:0:0,500,500:0:0.534653:36:0,0:0,0:73.1584,70.5:47,1:100.975,2.00792
  109. chrY 2786886 . A C 1484.13 PASS BQ=33.7382;GC=0.335581;HL=4;HR=4.60807;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.152499 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:42,1:46:0:0,500,500:0:0.452381:35:0,0:2,0:73.5476,25:23,0:41.9884,0.999385
  110. chrY 2786923 . G . 1484.13 PASS BQ=37;GC=0.395294;HL=3;HR=2.6142;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.145865 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:47:49:0:0:0:0.574468:37:0:2:52.5745:20:46.9906
  111. chrY 2786927 . T C 1484.13 PASS BQ=33.1192;GC=0.410401;HL=3;HR=2.77298;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:49,1:55:0:0,500,500:0:0.653061:34:0,0:2,0:46.7755,75:17,1:48.9822,1.00145
  112. chrY 2786992 . C A 1484.13 PASS BQ=37;GC=0.518296;HL=3;HR=1.49324;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:87,2:91:0:0,500,500:0:0.54023:37:0,0:0,0:75.7931,78:40,1:86.9827,2.00539
  113. chrY 2787008 . C A 1484.13 PASS BQ=37;GC=0.539907;HL=4;HR=1.55118;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.103142 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:92,2:94:0:0,500,500:0:0.521739:36:0,0:0,0:80.8696,98:44,1:91.9817,2.00572
  114. chrY 2787045 . T G 1484.13 PASS BQ=34.7276;GC=0.550451;HL=2;HR=1.51716;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:104,1:105:0:0,500,500:0:0.538462:35:0,0:0,0:79.6058,66:48,1:103.971,1.00511
  115. chrY 2787093 . C A 1484.13 PASS BQ=37;GC=0.548896;HL=3;HR=3.77716;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:106,1:107:0:0,500,500:0:0.509434:36:0,0:1,0:66.283,52:52,0:105.979,1.00685
  116. chrY 2787139 . G . 1484.13 PASS BQ=34.5452;GC=0.528581;HL=2;HR=1.46898;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.145095 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:95:96:0:0:0:0.610526:34:0:2:61.8632:37:94.9665
  117. chrY 2787143 . C A 1484.13 PASS BQ=35.2503;GC=0.528157;HL=2;HR=1.0128;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:95,2:97:0:0,500,500:0:0.610526:35:0,0:2,0:62.0105,67.5:37,1:94.9715,2.00913
  118. chrY 2787165 . C A 1484.13 PASS BQ=35.971;GC=0.514222;HL=3;HR=2.65378;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.105409 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:89,1:92:0:0,500,500:0:0.685393:35:0,0:2,0:66.0337,87:28,1:88.9774,1.00732
  119. chrY 2787176 . C A 1484.13 PASS BQ=37;GC=0.508385;HL=4;HR=2.60882;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.102598 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:93,2:95:0:0,500,500:0:0.666667:36:0,0:2,0:71.5591,80.5:31,1:92.9815,2.00578
  120. chrY 2787190 . C A 1484.13 PASS BQ=37;GC=0.505359;HL=2;HR=1.51866;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.101535 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:96,1:100:0:0,500,500:0:0.645833:36:0,0:2,0:74.9896,124:34,1:95.9808,1.00618
  121. chrY 2787193 . C A 1484.13 PASS BQ=35.2503;GC=0.504837;HL=2;HR=1.0128;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.143592 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:96,1:99:0:0,500,500:0:0.625:35:0,0:2,0:74,126:36,0:95.9712,1.00939
  122. chrY 2787209 . C A 1484.13 PASS BQ=34.6216;GC=0.501597;HL=2;HR=1.86611;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.100504 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:97,2:99:0:0,500,500:0:0.628866:34:0,0:2,0:80.732,74:36,1:96.9662,2.01086
  123. chrY 2787234 . A C 1484.13 PASS BQ=31.5507;GC=0.489055;HL=3;HR=4.94975;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:94,2:113:0:0,500,500:0:0.5:31:0,0:1,0:76.7979,90:47,0:93.9396,2.01548
  124. chrY 2787272 . T . 1484.13 PASS BQ=36.0636;GC=0.483545;HL=2;HR=2.78592;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.141421 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:100:103:0:0:0:0.51:36:0:1:81.94:49:99.9751
  125. chrY 2787304 . C A 1484.13 PASS BQ=36.1191;GC=0.485441;HL=4;HR=4.5438;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:106,1:108:0:0,500,500:0:0.339623:36:0,0:0,0:80.5189,134:70,1:105.974,1.00845
  126. chrY 2787310 . C A 1484.13 PASS BQ=35.335;GC=0.486392;HL=4;HR=5.50331;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:101,2:106:0:0,500,500:0:0.346535:35:0,0:0,0:78.7525,126.5:66,1:100.97,2.00952
  127. chrY 2787322 . C A 1484.13 PASS BQ=37;GC=0.490667;HL=3;HR=2.66974;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0995037 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:99,2:104:0:0,500,500:0:0.323232:36:0,0:1,0:76.7879,74.5:67,1:98.9803,2.00618
  128. chrY 2787328 . C A 1484.13 PASS BQ=36.0195;GC=0.491251;HL=2;HR=1.4912;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:94,1:96:0:0,500,500:0:0.340426:36:0,0:1,0:77.3723,66:62,1:93.9764,1.00766
  129. chrY 2787391 . A T 1484.13 PASS BQ=35.1397;GC=0.501777;HL=2;HR=1.40811;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:89,1:91:0:0,500,500:0:0.382022:35:0,0:1,0:62.6404,6:55,1:88.979,1.00251
  130. chrY 2787420 . G A 1484.13 PASS BQ=35.819;GC=0.497708;HL=3;HR=2.81373;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:76,1:77:0:0,500,500:0:0.368421:35:0,0:1,0:57.8553,115:48,1:75.98,1.00646
  131. chrY 2787426 . C A 1484.13 PASS BQ=37;GC=0.496018;HL=2;HR=1.43394;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:77,2:79:0:0,500,500:0:0.363636:37:0,0:1,0:55.0649,69.5:49,1:76.9847,2.00472
  132. chrY 2787467 . C A 1484.13 PASS BQ=35.5951;GC=0.471224;HL=3;HR=2.1877;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.125988 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:62,1:63:0:0,500,500:0:0.516129:35:0,0:0,0:71.7903,68:30,1:61.9828,1.00553
  133. chrY 2787469 . C A 1484.13 PASS BQ=35.5951;GC=0.470482;HL=3;HR=1.05417;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.125988 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:62,1:64:0:0,500,500:0:0.483871:37:0,0:0,0:72.129,59:32,0:61.9892,0.999111
  134. chrY 2787493 . A G 1484.13 PASS BQ=34.27;GC=0.463361;HL=3;HR=2.3533;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.190693 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:54,1:55:0:0,500,500:0:0.537037:34:0,0:0,0:76.2037,50:25,0:53.9796,1.0066
  135. chrY 2787511 . G T 1484.13 PASS BQ=37;GC=0.457089;HL=2;HR=1.98669;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:52,1:53:0:0,500,500:0:0.576923:37:0,0:0,0:72.0385,91:22,0:51.9896,1.00326
  136. chrY 2787519 . G T 1484.13 PASS BQ=35.3995;GC=0.450767;HL=2;HR=2.18408;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:52,2:54:0:0,500,500:0:0.596154:35:0,0:0,0:65.1154,108.5:21,1:51.9849,2.00466
  137. chrY 2787591 . C A 1484.13 PASS BQ=35.1397;GC=0.400531;HL=2;HR=1.49274;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:44,1:45:0:0,500,500:0:0.659091:35:0,0:1,0:67.9773,14:15,0:43.9864,1.00433
  138. chrY 2787607 . C A 1484.13 PASS BQ=37;GC=0.39357;HL=6;HR=6.40874;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.194257 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:52,1:56:0:0,500,500:0:0.596154:37:0,0:1,0:78.6731,7:21,0:51.9896,1.00326
  139. chrY 2787610 . A G 1484.13 PASS BQ=37;GC=0.391779;HL=6;HR=9.044;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.23355 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:54,1:57:0:0,500,500:0:0.555556:37:0,0:2,0:79.7407,20:24,0:53.9892,1.00339
  140. chrY 2787612 . A T 1484.13 PASS BQ=34.2326;GC=0.392464;HL=6;HR=9.86305;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.19245 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:53,1:57:0:0,500,500:0:0.584906:35:0,0:2,0:77.9811,35:22,0:52.9862,1.00012
  141. chrY 2787636 . A T 1484.13 PASS BQ=32.1388;GC=0.403286;HL=3;HR=4.50912;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:69,1:76:0:0,500,500:0:0.507246:32:0,0:3,0:91.2319,104:34,1:68.9638,1.0076
  142. chrY 2787672 . A C 1484.13 PASS BQ=34.9748;GC=0.406163;HL=4;HR=5.48293;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:80,1:81:0:0,500,500:0:0.4375:34:0,0:5,0:80.625,81:45,1:79.9744,1.00833
  143. chrY 2787696 . T G 1484.13 PASS BQ=34.934;GC=0.410285;HL=3;HR=3.19688;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:78,1:81:0:0,500,500:0:0.410256:34:0,0:5,0:80.2436,65:46,0:77.9748,1.0082
  144. chrY 2787757 . C A 1484.13 PASS BQ=35.4929;GC=0.465845;HL=4;HR=7.44319;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.227429 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:57,1:59:0:0,500,500:0:0.298246:35:0,0:3,0:63.9825,106:40,1:56.9838,1.00519
  145. chrY 2787760 . A G 1484.13 PASS BQ=35.4476;GC=0.4651;HL=3;HR=4.43068;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.231455 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:55,1:59:0:0,500,500:0:0.290909:37:0,0:2,0:60.1818,6:39,1:54.9906,0.998645
  146. chrY 2787761 . C A 1484.13 PASS BQ=33.4033;GC=0.465935;HL=3;HR=3.75459;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.298807 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:55,1:59:0:0,500,500:0:0.290909:33:0,0:2,0:60.3455,18:39,1:54.9746,1.00827
  147. chrY 2787762 . C A 1484.13 PASS BQ=37;GC=0.465466;HL=3;HR=2.78324;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.260378 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:58,1:59:0:0,500,500:0:0.310345:37:0,0:3,0:62.4138,17:40,1:57.9884,1.00366
  148. chrY 2787765 . C A 1484.13 PASS BQ=37;GC=0.463765;HL=3;HR=2.04469;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.258199 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:59,1:61:0:0,500,500:0:0.338983:37:0,0:3,0:58.7458,6:39,1:58.9882,1.00372
  149. chrY 2787768 . A T 1484.13 PASS BQ=35.424;GC=0.465752;HL=5;HR=7.70877;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.13484 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:54,1:59:0:0,500,500:0:0.296296:37:0,0:1,0:51,72:38,1:53.9908,0.998579
  150. chrY 2787781 . C A 1484.13 PASS BQ=37;GC=0.464752;HL=3;HR=2.77616;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.288675 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:47,1:50:0:0,500,500:0:0.468085:37:0,0:1,0:56.7234,58:25,1:46.9906,1.00293
  151. chrY 2787804 . C A 1484.13 PASS BQ=37;GC=0.46262;HL=5;HR=5.73246;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:44,1:46:0:0,500,500:0:0.454545:37:0,0:0,0:58.75,46:24,0:43.9912,1.00273
  152. chrY 2787814 . T C 1484.13 PASS BQ=35.265;GC=0.458293;HL=2;HR=2.7942;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:48,1:50:0:0,500,500:0:0.5:35:0,0:0,0:55.5417,57:24,1:47.9856,1.0046
  153. chrY 2787913 . C A 1484.13 PASS BQ=35.0879;GC=0.341524;HL=6;HR=10.49;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:85,2:92:0:0,500,500:0:0.482353:35:0,0:2,0:87.7647,92.5:44,1:84.9735,2.00846
  154. chrY 2787948 . A . 1484.13 PASS BQ=34.8472;GC=0.322314;HL=5;HR=9;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:75:78:0:0:0:0.413333:34:0:4:81.8133:44:74.9753
  155. chrY 2788021 . A C 1012.38 PASS BQ=32.9303;GC=0.274623;HL=3;HR=2.20104;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:30,1:34:0:0,462,462:0:0.2:34:0,0:1,1:44.2667,30:24,1:29.9908,0.998587
  156. chrY 2788096 . C A 27.6997 QUAL=27.699653 BQ=37;GC=0.243949;HL=2;HR=2.13274;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:12,2:14:0:0,98,102:0:0.416667:37:0,0:2,0:79.75,83.5:7,1:11.9977,2.0004
  157. chrY 2788162 . C A 64.1524 PASS BQ=37;GC=0.269145;HL=2;HR=1.47358;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:14,1:17:0:0,185,186:0:0.5:36:0,0:2,0:68.7857,35:7,1:13.9973,1.00073
  158. chrY 2788235 . G . 85.5349 PASS BQ=37;GC=0.300052;HL=3;HR=5;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:13:15:0:0:0:0.538462:37:0:2:72:6:12.9974
  159. chrY 2788652 . C A 101.393 PASS BQ=33.8905;GC=0.356543;HL=3;HR=1.8103;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:21,2:23:0:0,231,232:0:0.47619:33:0,0:1,0:70.619,71:11,1:20.9911,2.0026
  160. chrY 2788872 . T . 10.9479 DP=1;GTL=0.905585;QUAL=10.947855 BQ=37;GC=0.258278;HL=3;HR=3.2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:1:1:0:0:0:1:37:0:0:16:0:0.999799
  161. chrY 2788918 . T . 23.5779 QUAL=23.577870 BQ=37;GC=0.275;HL=4;HR=5.16176;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:6:6:0:0:0:0.833333:37:0:0:36:1:5.9988
  162. chrY 2788920 . G . 23.5779 QUAL=23.577870 BQ=37;GC=0.275;HL=3;HR=2.71228;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:6:6:0:0:0:0.833333:37:0:0:37.3333:1:5.9988
  163. chrY 2788951 . G . 33.7761 QUAL=33.776128 BQ=37;GC=0.285195;HL=2;HR=2.2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:8:8:0:0:0:0.875:37:0:0:47.375:1:7.9984
  164. chrY 2789030 . A . 816.964 PASS BQ=37;GC=0.337974;HL=3;HR=3.8;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:25:26:0:0:0:0.52:36:0:0:85.56:12:24.995
  165. chrY 2789135 . C . 1484.13 PASS BQ=37;GC=0.371405;HL=2;HR=1.50545;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:49:49:0:0:0:0.653061:37:0:2:46.6531:17:48.9902
  166. chrY 2789173 . G . 1484.13 PASS BQ=35.6139;GC=0.388644;HL=2;HR=1.52449;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:64:64:0:0:0:0.65625:35:0:2:62.6875:22:63.9824
  167. chrY 2789201 . G . 1484.13 PASS BQ=37;GC=0.394124;HL=3;HR=4.48543;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:74:77:0:0:0:0.635135:37:0:1:74.6757:27:73.9852
  168. chrY 2789206 . G . 1484.13 PASS BQ=35.7478;GC=0.395039;HL=3;HR=5.75;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:72:76:0:0:0:0.611111:35:0:1:75.5833:28:71.9807
  169. chrY 2789289 . G A 1484.13 PASS BQ=36.0007;GC=0.426145;HL=2;HR=1.42063;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.103695 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:91,2:95:0:0,500,500:0:0.472527:35:0,0:1,0:68.5714,85:48,1:90.9771,2.00726
  170. chrY 2789308 . T . 1484.13 PASS BQ=33.7113;GC=0.424849;HL=2;HR=2.2;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:85:89:0:0:0:0.423529:33:0:1:69.7059:49:84.9637
  171. chrY 2789323 . C A 1484.13 PASS BQ=37;GC=0.428634;HL=2;HR=1.50129;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:78,2:80:0:0,500,500:0:0.397436:37:0,0:1,0:66.7436,92.5:47,1:77.9845,2.00479
  172. chrY 2789334 . G T 1484.13 PASS BQ=35.9175;GC=0.428904;HL=1;HR=1;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.108465 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:83,2:85:0:0,500,500:0:0.421687:35:0,0:1,0:59.1807,63:48,1:82.9787,2.00672
  173. chrY 2789358 . G T 1484.13 PASS BQ=37;GC=0.427743;HL=2;HR=1.98746;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:73,2:75:0:0,500,500:0:0.520548:37:0,0:1,0:57.137,94.5:35,1:72.9855,2.00445
  174. chrY 2789401 . T . 1484.13 PASS BQ=34.6216;GC=0.40631;HL=3;HR=3.73475;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:66:69:0:0:0:0.484848:34:0:2:79.3939:34:65.9771
  175. chrY 2789446 . C A 1484.13 PASS BQ=35.265;GC=0.389006;HL=2;HR=1.49209;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:48,1:51:0:0,500,500:0:0.458333:35:0,0:1,0:75.9583,115:26,0:47.9856,1.0046
  176. chrY 2789462 . G A 1484.13 PASS BQ=37;GC=0.382901;HL=1;HR=1;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:45,2:51:0:0,500,500:0:0.444444:37:0,0:1,0:74.9111,81.5:25,1:44.9911,2.00259
  177. chrY 2789473 . T G 1484.13 PASS BQ=35.1397;GC=0.383707;HL=4;HR=5.24987;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:44,1:49:0:0,500,500:0:0.454545:37:0,0:1,0:85.3864,19:24,0:43.9928,0.997914
  178. chrY 2789541 . T A 1440.27 PASS BQ=33.0934;GC=0.344255;HL=2;HR=2.13664;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:32,1:33:0:0,497,497:0:0.625:34:0,0:2,0:44.0625,7:12,0:31.9904,0.99872
  179. chrY 2789587 . C A 1484.13 PASS BQ=37;GC=0.35718;HL=4;HR=3.15656;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.160128 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:38,1:39:0:0,500,500:0:0.789474:37:0,0:1,0:57.1842,60:8,0:37.9924,1.00233
  180. chrY 2789698 . C A 1484.13 PASS BQ=35.6139;GC=0.402786;HL=2;HR=1.53149;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:62,2:65:0:0,500,500:0:0.516129:35:0,0:2,0:83.7742,95.5:30,1:61.9829,2.00533
  181. chrY 2789720 . C A 1484.13 PASS BQ=35.6843;GC=0.425777;HL=6;HR=11.7499;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:66,2:69:0:0,500,500:0:0.484848:35:0,0:2,0:79.3182,74.5:34,1:65.9821,2.00559
  182. chrY 2789764 . T G 1484.13 PASS BQ=31.7522;GC=0.506495;HL=4;HR=5.15949;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.110432 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:81,1:95:0:0,500,500:0:0.580247:32:0,0:2,0:50.7531,131:34,1:80.9517,1.0116
  183. chrY 2789792 . T A 1484.13 PASS BQ=36.1265;GC=0.563417;HL=3;HR=3.77487;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.136083 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:107,1:114:0:0,500,500:0:0.504673:36:0,0:1,0:68.1963,21:53,0:106.974,1.00852
  184. chrY 2789802 . A T 1484.13 PASS BQ=34.4582;GC=0.577431;HL=3;HR=4.11681;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0909091 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:120,1:124:0:0,500,500:0:0.491667:34:0,0:1,0:72.325,13:61,0:119.957,1.0142
  185. chrY 2789835 . C A 1484.13 PASS BQ=35.7169;GC=0.610709;HL=2;HR=1.50875;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:136,4:143:0:0,500,500:0:0.529412:35:0,0:1,0:74.8162,76.5:64,2:135.963,4.01145
  186. chrY 2789864 . G A 1484.13 PASS BQ=35.9341;GC=0.635551;HL=2;HR=1.0072;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0760286 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:172,1:174:0:0,500,500:0:0.552326:35:0,0:5,0:67.5581,31:77,1:171.956,1.01445
  187. chrY 2789900 . C A 1484.13 PASS BQ=35.7115;GC=0.66338;HL=5;HR=10.0664;IndelCnt=0.0978232;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:207,2:209:0:0,500,500:0:0.497585:35:0,0:7,0:64.0531,48.5:104,1:206.944,2.01818
  188. chrY 2789911 . C A 1484.13 PASS BQ=35.858;GC=0.665451;HL=2;HR=1.00519;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0645497 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:239,1:240:0:0,500,500:0:0.514644:36:0,0:10,0:59.9833,24:116,0:238.944,1.01409
  189. chrY 2789948 . C A 1484.13 PASS BQ=36.531;GC=0.671206;HL=4;HR=2.00355;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0688428 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:210,1:214:0:0,500,500:0:0.57619:36:0,0:6,0:63.8619,11:89,0:209.953,1.01537
  190. chrY 2789966 . C A 1484.13 PASS BQ=35.6731;GC=0.668927;HL=3;HR=2.48398;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0703598 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:201,1:202:0:0,500,500:0:0.557214:36:0,0:6,0:72.3184,26:89,0:200.952,1.01156
  191. chrY 2789970 . C A 1484.13 PASS BQ=36.4995;GC=0.668833;HL=3;HR=3.78586;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.100759 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:196,1:198:0:0,500,500:0:0.556122:36:0,0:5,0:72.0612,30:87,0:195.956,1.01444
  192. chrY 2789977 . C A 1484.13 PASS BQ=36.4995;GC=0.667958;HL=4;HR=6.72124;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.100759 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:195,2:199:0:0,500,500:0:0.538462:36:0,0:6,0:74.8872,77.5:90,1:194.956,2.01417
  193. chrY 2789984 . A T 1484.13 PASS BQ=34.1197;GC=0.665747;HL=3;HR=2.59269;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.105703 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:178,1:193:0:0,500,500:0:0.52809:34:0,0:6,0:74.6685,35:84,1:177.937,1.01645
  194. chrY 2789989 . T G 1484.13 PASS BQ=35.463;GC=0.662875;HL=2;HR=2.18732;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.153393 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:169,1:198:0:0,500,500:0:0.514793:35:0,0:7,0:73.2249,102:82,0:168.952,1.01585
  195. chrY 2790007 . C A 1484.13 PASS BQ=35.9659;GC=0.662364;HL=4;HR=4.63856;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.105703 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:176,3:179:0:0,500,500:0:0.522727:36:0,0:6,0:77.8011,80:84,2:175.962,3.0079
  196. chrY 2790049 . G . 1484.13 PASS BQ=33.8626;GC=0.648489;HL=5;HR=2.871;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0793052 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:159:160:0:0:0:0.584906:33:0:7:79.5597:66:158.934
  197. chrY 2790072 . A C 1484.13 PASS BQ=34.8127;GC=0.630077;HL=2;HR=2.00538;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:146,1:164:0:0,500,500:0:0.527397:35:0,0:4,0:67.7123,10:69,1:145.958,1.00951
  198. chrY 2790109 . C A 1484.13 PASS BQ=35.2046;GC=0.624514;HL=4;HR=5.43635;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0729325 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:187,1:190:0:0,500,500:0:0.427807:35:0,0:4,0:75.4652,57:107,0:186.943,1.01865
  199. chrY 2790118 . G . 1484.13 PASS BQ=36.4635;GC=0.622618;HL=3;HR=4.543;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:183:184:0:0:0:0.442623:36:0:4:76.0656:102:182.958
  200. chrY 2790134 . A G 1484.13 PASS BQ=35.0235;GC=0.619484;HL=2;HR=2.2031;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:166,1:176:0:0,500,500:0:0.439759:35:0,0:4,0:79.2651,32:93,0:165.954,1.01084
  201. chrY 2790151 . C A 1484.13 PASS BQ=37;GC=0.618831;HL=3;HR=3.20913;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:158,2:161:0:0,500,500:0:0.43038:36:0,0:5,0:81.8481,76:90,1:157.968,2.01011
  202. chrY 2790162 . C A 1484.13 PASS BQ=37;GC=0.618259;HL=3;HR=2.86313;IndelCnt=0;MQ=60;MQ0=0;MismatchCnt=0.0805823 GT:AD:DP:GQ:PL:AB:SR:BQ:LowMQ:ClipCnt:ReadOffset:RAD:AS 0/0:153,1:154:0:0,500,500:0:0.398693:36:0,0:5,0:78.1503,49:92,0:152.969,1.00998
  203. chrY 2790166 . T G 1484.13 PASS BQ=32.2427
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