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vrts_MYC_ARM_LBA

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May 2nd, 2022
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  1. qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: /home/vrts/host/vrts1240K/fstatsa.txt
  5. popleft: /home/vrts/host/vrts1240K/left.txt
  6. popright: /home/vrts/host/vrts1240K/right.txt
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: 1641623103
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. vrts
  15. Armenia_LBA.SG
  16. Greece_BA_Mycenaean
  17.  
  18. right pops:
  19. Mbuti.DG
  20. Russia_Ust_Ishim.DG
  21. China_Tianyuan
  22. Goyet_Neanderthal.SG
  23. Russia_Sunghir3.SG
  24. Russia_Kostenki14.SG
  25. Tarim_EMBA1
  26. CHG
  27. Russia_DevilsCave_N.SG
  28. Papuan.DG
  29. Iran_N
  30. Greece_Peloponnese_N
  31. Greece_Minoan_Lassithi
  32. Russia_Steppe_Eneolithic
  33. ONG.SG
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 1 dof: 13 chisq: 12.370 tail: 0.497586597 dofdiff: 15 chisqdiff: -12.370 taildiff: 1
  38. B:
  39. scale 1.000
  40. Russia_Ust_Ishim.DG -0.010
  41. China_Tianyuan 0.285
  42. Goyet_Neanderthal.SG 0.092
  43. Russia_Sunghir3.SG 0.557
  44. Russia_Kostenki14.SG 0.052
  45. Tarim_EMBA1 -1.167
  46. CHG -0.926
  47. Russia_DevilsCave_N.SG 0.064
  48. Papuan.DG 0.371
  49. Iran_N -0.514
  50. Greece_Peloponnese_N 2.527
  51. Greece_Minoan_Lassithi 2.048
  52. Russia_Steppe_Eneolithic -0.541
  53. ONG.SG 0.317
  54. A:
  55. scale 1111.034
  56. Armenia_LBA.SG -1.262
  57. Greece_BA_Mycenaean 0.639
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 12.370 taildiff: 0.497586597
  63. B:
  64. scale 847.139 1380.958
  65. Russia_Ust_Ishim.DG 0.087 0.334
  66. China_Tianyuan 0.012 0.901
  67. Goyet_Neanderthal.SG -0.235 -0.211
  68. Russia_Sunghir3.SG -0.677 0.133
  69. Russia_Kostenki14.SG -0.116 0.085
  70. Tarim_EMBA1 1.487 -0.309
  71. CHG 0.804 -1.006
  72. Russia_DevilsCave_N.SG 0.671 1.455
  73. Papuan.DG -0.368 0.347
  74. Iran_N 0.938 0.471
  75. Greece_Peloponnese_N -2.277 2.340
  76. Greece_Minoan_Lassithi -1.871 1.867
  77. Russia_Steppe_Eneolithic 0.669 -0.140
  78. ONG.SG -0.108 0.679
  79. A:
  80. scale 1.414 1.414
  81. Armenia_LBA.SG 1.414 0.000
  82. Greece_BA_Mycenaean 0.000 1.414
  83.  
  84.  
  85. best coefficients: 0.336 0.664
  86. totmean: 0.336 0.664
  87. boot mean: 0.335 0.665
  88. std. errors: 0.053 0.053
  89.  
  90. error covariance (* 1,000,000)
  91. 2790 -2790
  92. -2790 2790
  93.  
  94.  
  95. summ: vrts 2 0.497587 0.335 0.665 2790 -2790 2790
  96.  
  97. fixed pat wt dof chisq tail prob
  98. 00 0 13 12.370 0.497587 0.336 0.664
  99. 01 1 14 168.394 1.44494e-28 1.000 0.000
  100. 10 1 14 43.997 5.92541e-05 0.000 1.000
  101. best pat: 00 0.497587 - -
  102. best pat: 10 5.92541e-05 chi(nested): 31.628 p-value for nested model: 1.86744e-08
  103.  
  104. coeffs: 0.336 0.664
  105.  
  106. ## dscore:: f_4(Base, Fit, Rbase, right2)
  107. ## genstat:: f_4(Base, Fit, right1, right2)
  108.  
  109. details: Armenia_LBA.SG Russia_Ust_Ishim.DG 0.000103 0.202373
  110. details: Greece_BA_Mycenaean Russia_Ust_Ishim.DG 0.000242 0.436443
  111. dscore: Russia_Ust_Ishim.DG f4: 0.000195 Z: 0.395529
  112.  
  113. details: Armenia_LBA.SG China_Tianyuan 0.000014 0.024462
  114. details: Greece_BA_Mycenaean China_Tianyuan 0.000652 1.061945
  115. dscore: China_Tianyuan f4: 0.000438 Z: 0.794167
  116.  
  117. details: Armenia_LBA.SG Goyet_Neanderthal.SG -0.000277 -0.674506
  118. details: Greece_BA_Mycenaean Goyet_Neanderthal.SG -0.000153 -0.378564
  119. dscore: Goyet_Neanderthal.SG f4: -0.000195 Z: -0.546295
  120.  
  121. details: Armenia_LBA.SG Russia_Sunghir3.SG -0.000799 -1.361712
  122. details: Greece_BA_Mycenaean Russia_Sunghir3.SG 0.000096 0.155512
  123. dscore: Russia_Sunghir3.SG f4: -0.000204 Z: -0.364805
  124.  
  125. details: Armenia_LBA.SG Russia_Kostenki14.SG -0.000137 -0.229303
  126. details: Greece_BA_Mycenaean Russia_Kostenki14.SG 0.000061 0.100081
  127. dscore: Russia_Kostenki14.SG f4: -0.000005 Z: -0.009413
  128.  
  129. details: Armenia_LBA.SG Tarim_EMBA1 0.001756 3.596283
  130. details: Greece_BA_Mycenaean Tarim_EMBA1 -0.000223 -0.441022
  131. dscore: Tarim_EMBA1 f4: 0.000442 Z: 0.960730
  132.  
  133. details: Armenia_LBA.SG CHG 0.000949 1.889758
  134. details: Greece_BA_Mycenaean CHG -0.000728 -1.397886
  135. dscore: CHG f4: -0.000165 Z: -0.351331
  136.  
  137. details: Armenia_LBA.SG Russia_DevilsCave_N.SG 0.000792 1.693818
  138. details: Greece_BA_Mycenaean Russia_DevilsCave_N.SG 0.001053 2.126525
  139. dscore: Russia_DevilsCave_N.SG f4: 0.000966 Z: 2.168482
  140.  
  141. details: Armenia_LBA.SG Papuan.DG -0.000434 -1.014806
  142. details: Greece_BA_Mycenaean Papuan.DG 0.000251 0.540030
  143. dscore: Papuan.DG f4: 0.000021 Z: 0.050388
  144.  
  145. details: Armenia_LBA.SG Iran_N 0.001107 2.727434
  146. details: Greece_BA_Mycenaean Iran_N 0.000341 0.795864
  147. dscore: Iran_N f4: 0.000599 Z: 1.559228
  148.  
  149. details: Armenia_LBA.SG Greece_Peloponnese_N -0.002688 -6.550970
  150. details: Greece_BA_Mycenaean Greece_Peloponnese_N 0.001694 3.782380
  151. dscore: Greece_Peloponnese_N f4: 0.000222 Z: 0.561266
  152.  
  153. details: Armenia_LBA.SG Greece_Minoan_Lassithi -0.002208 -5.266974
  154. details: Greece_BA_Mycenaean Greece_Minoan_Lassithi 0.001352 2.952874
  155. dscore: Greece_Minoan_Lassithi f4: 0.000156 Z: 0.384779
  156.  
  157. details: Armenia_LBA.SG Russia_Steppe_Eneolithic 0.000790 1.756451
  158. details: Greece_BA_Mycenaean Russia_Steppe_Eneolithic -0.000101 -0.215093
  159. dscore: Russia_Steppe_Eneolithic f4: 0.000198 Z: 0.467929
  160.  
  161. details: Armenia_LBA.SG ONG.SG -0.000128 -0.293263
  162. details: Greece_BA_Mycenaean ONG.SG 0.000492 1.059200
  163. dscore: ONG.SG f4: 0.000284 Z: 0.680897
  164.  
  165. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.396
  166. gendstat: Mbuti.DG China_Tianyuan 0.794
  167. gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.546
  168. gendstat: Mbuti.DG Russia_Sunghir3.SG -0.365
  169. gendstat: Mbuti.DG Russia_Kostenki14.SG -0.009
  170. gendstat: Mbuti.DG Tarim_EMBA1 0.961
  171. gendstat: Mbuti.DG CHG -0.351
  172. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 2.168
  173. gendstat: Mbuti.DG Papuan.DG 0.050
  174. gendstat: Mbuti.DG Iran_N 1.559
  175. gendstat: Mbuti.DG Greece_Peloponnese_N 0.561
  176. gendstat: Mbuti.DG Greece_Minoan_Lassithi 0.385
  177. gendstat: Mbuti.DG Russia_Steppe_Eneolithic 0.468
  178. gendstat: Mbuti.DG ONG.SG 0.681
  179. gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.403
  180. gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -0.667
  181. gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.676
  182. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -0.340
  183. gendstat: Russia_Ust_Ishim.DG Tarim_EMBA1 0.469
  184. gendstat: Russia_Ust_Ishim.DG CHG -0.657
  185. gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG 1.543
  186. gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.356
  187. gendstat: Russia_Ust_Ishim.DG Iran_N 0.845
  188. gendstat: Russia_Ust_Ishim.DG Greece_Peloponnese_N 0.054
  189. gendstat: Russia_Ust_Ishim.DG Greece_Minoan_Lassithi -0.079
  190. gendstat: Russia_Ust_Ishim.DG Russia_Steppe_Eneolithic 0.006
  191. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.187
  192. gendstat: China_Tianyuan Goyet_Neanderthal.SG -0.973
  193. gendstat: China_Tianyuan Russia_Sunghir3.SG -1.039
  194. gendstat: China_Tianyuan Russia_Kostenki14.SG -0.686
  195. gendstat: China_Tianyuan Tarim_EMBA1 0.007
  196. gendstat: China_Tianyuan CHG -0.977
  197. gendstat: China_Tianyuan Russia_DevilsCave_N.SG 0.971
  198. gendstat: China_Tianyuan Papuan.DG -0.797
  199. gendstat: China_Tianyuan Iran_N 0.285
  200. gendstat: China_Tianyuan Greece_Peloponnese_N -0.391
  201. gendstat: China_Tianyuan Greece_Minoan_Lassithi -0.499
  202. gendstat: China_Tianyuan Russia_Steppe_Eneolithic -0.425
  203. gendstat: China_Tianyuan ONG.SG -0.296
  204. gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG -0.015
  205. gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.298
  206. gendstat: Goyet_Neanderthal.SG Tarim_EMBA1 1.118
  207. gendstat: Goyet_Neanderthal.SG CHG 0.053
  208. gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 2.190
  209. gendstat: Goyet_Neanderthal.SG Papuan.DG 0.413
  210. gendstat: Goyet_Neanderthal.SG Iran_N 1.593
  211. gendstat: Goyet_Neanderthal.SG Greece_Peloponnese_N 0.805
  212. gendstat: Goyet_Neanderthal.SG Greece_Minoan_Lassithi 0.679
  213. gendstat: Goyet_Neanderthal.SG Russia_Steppe_Eneolithic 0.744
  214. gendstat: Goyet_Neanderthal.SG ONG.SG 0.913
  215. gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.327
  216. gendstat: Russia_Sunghir3.SG Tarim_EMBA1 1.197
  217. gendstat: Russia_Sunghir3.SG CHG 0.066
  218. gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 2.113
  219. gendstat: Russia_Sunghir3.SG Papuan.DG 0.409
  220. gendstat: Russia_Sunghir3.SG Iran_N 1.419
  221. gendstat: Russia_Sunghir3.SG Greece_Peloponnese_N 0.778
  222. gendstat: Russia_Sunghir3.SG Greece_Minoan_Lassithi 0.662
  223. gendstat: Russia_Sunghir3.SG Russia_Steppe_Eneolithic 0.750
  224. gendstat: Russia_Sunghir3.SG ONG.SG 0.904
  225. gendstat: Russia_Kostenki14.SG Tarim_EMBA1 0.831
  226. gendstat: Russia_Kostenki14.SG CHG -0.271
  227. gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 1.663
  228. gendstat: Russia_Kostenki14.SG Papuan.DG 0.047
  229. gendstat: Russia_Kostenki14.SG Iran_N 1.135
  230. gendstat: Russia_Kostenki14.SG Greece_Peloponnese_N 0.426
  231. gendstat: Russia_Kostenki14.SG Greece_Minoan_Lassithi 0.301
  232. gendstat: Russia_Kostenki14.SG Russia_Steppe_Eneolithic 0.376
  233. gendstat: Russia_Kostenki14.SG ONG.SG 0.509
  234. gendstat: Tarim_EMBA1 CHG -1.196
  235. gendstat: Tarim_EMBA1 Russia_DevilsCave_N.SG 1.171
  236. gendstat: Tarim_EMBA1 Papuan.DG -0.924
  237. gendstat: Tarim_EMBA1 Iran_N 0.359
  238. gendstat: Tarim_EMBA1 Greece_Peloponnese_N -0.480
  239. gendstat: Tarim_EMBA1 Greece_Minoan_Lassithi -0.641
  240. gendstat: Tarim_EMBA1 Russia_Steppe_Eneolithic -0.608
  241. gendstat: Tarim_EMBA1 ONG.SG -0.357
  242. gendstat: CHG Russia_DevilsCave_N.SG 2.235
  243. gendstat: CHG Papuan.DG 0.361
  244. gendstat: CHG Iran_N 1.782
  245. gendstat: CHG Greece_Peloponnese_N 0.873
  246. gendstat: CHG Greece_Minoan_Lassithi 0.738
  247. gendstat: CHG Russia_Steppe_Eneolithic 0.829
  248. gendstat: CHG ONG.SG 0.910
  249. gendstat: Russia_DevilsCave_N.SG Papuan.DG -2.278
  250. gendstat: Russia_DevilsCave_N.SG Iran_N -0.846
  251. gendstat: Russia_DevilsCave_N.SG Greece_Peloponnese_N -1.570
  252. gendstat: Russia_DevilsCave_N.SG Greece_Minoan_Lassithi -1.773
  253. gendstat: Russia_DevilsCave_N.SG Russia_Steppe_Eneolithic -1.713
  254. gendstat: Russia_DevilsCave_N.SG ONG.SG -1.739
  255. gendstat: Papuan.DG Iran_N 1.350
  256. gendstat: Papuan.DG Greece_Peloponnese_N 0.457
  257. gendstat: Papuan.DG Greece_Minoan_Lassithi 0.301
  258. gendstat: Papuan.DG Russia_Steppe_Eneolithic 0.412
  259. gendstat: Papuan.DG ONG.SG 0.676
  260. gendstat: Iran_N Greece_Peloponnese_N -0.969
  261. gendstat: Iran_N Greece_Minoan_Lassithi -1.117
  262. gendstat: Iran_N Russia_Steppe_Eneolithic -1.028
  263. gendstat: Iran_N ONG.SG -0.731
  264. gendstat: Greece_Peloponnese_N Greece_Minoan_Lassithi -0.196
  265. gendstat: Greece_Peloponnese_N Russia_Steppe_Eneolithic -0.062
  266. gendstat: Greece_Peloponnese_N ONG.SG 0.147
  267. gendstat: Greece_Minoan_Lassithi Russia_Steppe_Eneolithic 0.110
  268. gendstat: Greece_Minoan_Lassithi ONG.SG 0.304
  269. gendstat: Russia_Steppe_Eneolithic ONG.SG 0.208
  270.  
  271. ##end of qpAdm: 2.126 seconds cpu 0.823 Mbytes in use
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