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- #!/bin/bash
- # The following block can be used by the job system
- # to ensure this script is runnable before actually attempting
- # to run it.
- if [ -n "$ABC_TEST_JOB_SCRIPT_INTEGRITY_XYZ" ]; then
- exit 42
- fi
- [ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '/home/user/galaxy/database/dependencies/_conda/envs/mulled-v1-1fdf004bae7d448d7fc889acfdab5ae5aa1df6c114a660422dc114ed091c3e07')" ] || {
- MAX_TRIES=3
- COUNT=0
- while [ $COUNT -lt $MAX_TRIES ]; do
- . '/home/user/galaxy/database/dependencies/_conda/bin/activate' '/home/user/galaxy/database/dependencies/_conda/envs/mulled-v1-1fdf004bae7d448d7fc889acfdab5ae5aa1df6c114a660422dc114ed091c3e07' > conda_activate.log 2>&1
- if [ $? -eq 0 ];then
- break
- else
- let COUNT=COUNT+1
- if [ $COUNT -eq $MAX_TRIES ];then
- echo "Failed to activate conda environment! Error was:"
- cat conda_activate.log
- exit 1
- fi
- sleep 10s
- fi
- done
- } ; [ "$(basename "$CONDA_DEFAULT_ENV")" = "$(basename '/home/user/galaxy/database/dependencies/_conda/envs/mulled-v1-1fdf004bae7d448d7fc889acfdab5ae5aa1df6c114a660422dc114ed091c3e07')" ] || {
- MAX_TRIES=3
- COUNT=0
- while [ $COUNT -lt $MAX_TRIES ]; do
- . '/home/user/galaxy/database/dependencies/_conda/bin/activate' '/home/user/galaxy/database/dependencies/_conda/envs/mulled-v1-1fdf004bae7d448d7fc889acfdab5ae5aa1df6c114a660422dc114ed091c3e07' > conda_activate.log 2>&1
- if [ $? -eq 0 ];then
- break
- else
- let COUNT=COUNT+1
- if [ $COUNT -eq $MAX_TRIES ];then
- echo "Failed to activate conda environment! Error was:"
- cat conda_activate.log
- exit 1
- fi
- sleep 10s
- fi
- done
- } ; python /home/user/galaxy/database/shed_tools/localhost/repos/admin/test_toy/ed1a21af8571/test_toy/testtoy.py '/home/user/galaxy/database/objects/8/6/c/dataset_86c6a42b-03ac-425d-afe5-be8c579afdc6.dat' > '/home/user/galaxy/database/objects/8/e/2/dataset_8e24d67e-a054-4f5f-89ff-09f63e64c6e5.dat'
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