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  1. (ven) b-an01 [~/pfs/NeuroNER-master/src]$ srun python3.5 main.py
  2. WARNING:tensorflow:From /hpc2n/eb/software/MPI/GCC-CUDA/6.4.0-2.28-9.0.176/OpenMPI/2.1.1/TensorFlow/1.7.0-Python-3.5.2/lib/python3.5/site-packages/tensorflow/contrib/learn/python/learn/datasets/base.py:198: retry (from tensorflow.contrib.learn.python.learn.datasets.base) is deprecated and will be removed in a future version.
  3. Instructions for updating:
  4. Use the retry module or similar alternatives.
  5. WARNING:tensorflow:From /hpc2n/eb/software/MPI/GCC-CUDA/6.4.0-2.28-9.0.176/OpenMPI/2.1.1/TensorFlow/1.7.0-Python-3.5.2/lib/python3.5/site-packages/tensorflow/contrib/learn/python/learn/datasets/base.py:198: retry (from tensorflow.contrib.learn.python.learn.datasets.base) is deprecated and will be removed in a future version.
  6. Instructions for updating:
  7. Use the retry module or similar alternatives.
  8. Traceback (most recent call last):
  9. File "main.py", line 13, in <module>
  10. from neuroner import NeuroNER
  11. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/neuroner.py", line 19, in <module>
  12. import brat_to_conll
  13. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/brat_to_conll.py", line 5, in <module>
  14. import spacy
  15. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/__init__.py", line 4, in <module>
  16. from .cli.info import info as cli_info
  17. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/__init__.py", line 1, in <module>
  18. from .download import download
  19. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/download.py", line 8, in <module>
  20. import ujson
  21. ImportError: libimf.so: cannot open shared object file: No such file or directory
  22. Traceback (most recent call last):
  23. File "main.py", line 13, in <module>
  24. from neuroner import NeuroNER
  25. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/neuroner.py", line 19, in <module>
  26. import brat_to_conll
  27. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/brat_to_conll.py", line 5, in <module>
  28. import spacy
  29. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/__init__.py", line 4, in <module>
  30. from .cli.info import info as cli_info
  31. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/__init__.py", line 1, in <module>
  32. from .download import download
  33. File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/download.py", line 8, in <module>
  34. import ujson
  35. ImportError: libimf.so: cannot open shared object file: No such file or directory
  36. srun: error: b-cn0835: tasks 0-1: Exited with exit code 1
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