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  1. (ven) b-an01 [~/pfs/NeuroNER-master/src]$ srun python3.5 main.py
  2. WARNING:tensorflow:From /hpc2n/eb/software/MPI/GCC-CUDA/6.4.0-2.28-9.0.176/OpenMPI/2.1.1/TensorFlow/1.7.0-Python-3.5.2/lib/python3.5/site-packages/tensorflow/contrib/learn/python/learn/datasets/base.py:198: retry (from tensorflow.contrib.learn.python.learn.datasets.base) is deprecated and will be removed in a future version.
  3. Instructions for updating:
  4. Use the retry module or similar alternatives.
  5. WARNING:tensorflow:From /hpc2n/eb/software/MPI/GCC-CUDA/6.4.0-2.28-9.0.176/OpenMPI/2.1.1/TensorFlow/1.7.0-Python-3.5.2/lib/python3.5/site-packages/tensorflow/contrib/learn/python/learn/datasets/base.py:198: retry (from tensorflow.contrib.learn.python.learn.datasets.base) is deprecated and will be removed in a future version.
  6. Instructions for updating:
  7. Use the retry module or similar alternatives.
  8. Traceback (most recent call last):
  9.   File "main.py", line 13, in <module>
  10.     from neuroner import NeuroNER
  11.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/neuroner.py", line 19, in <module>
  12.     import brat_to_conll
  13.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/brat_to_conll.py", line 5, in <module>
  14.     import spacy
  15.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/__init__.py", line 4, in <module>
  16.     from .cli.info import info as cli_info
  17.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/__init__.py", line 1, in <module>
  18.     from .download import download
  19.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/download.py", line 8, in <module>
  20.     import ujson
  21. ImportError: libimf.so: cannot open shared object file: No such file or directory
  22. Traceback (most recent call last):
  23.   File "main.py", line 13, in <module>
  24.     from neuroner import NeuroNER
  25.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/neuroner.py", line 19, in <module>
  26.     import brat_to_conll
  27.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/src/brat_to_conll.py", line 5, in <module>
  28.     import spacy
  29.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/__init__.py", line 4, in <module>
  30.     from .cli.info import info as cli_info
  31.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/__init__.py", line 1, in <module>
  32.     from .download import download
  33.   File "/pfs/nobackup/home/d/dansjo/NeuroNER-master/ven/lib/python3.5/site-packages/spacy/cli/download.py", line 8, in <module>
  34.     import ujson
  35. ImportError: libimf.so: cannot open shared object file: No such file or directory
  36. srun: error: b-cn0835: tasks 0-1: Exited with exit code 1
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