Advertisement
Guest User

Untitled

a guest
Feb 21st, 2018
82
0
Never
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 2.10 KB | None | 0 0
  1. $ nextflow run main.nf
  2. N E X T F L O W ~ version 0.27.6
  3. Launching `main.nf` [lonely_torvalds] - revision: e7234adafd
  4. [warm up] executor > local
  5. [f3/03efca] Submitted process > test (3)
  6. [ca/b06143] Submitted process > test (4)
  7. [04/d99e0c] Submitted process > test (2)
  8. [1d/3d3e95] Submitted process > test (1)
  9. [b5/50b6c5] Submitted process > test (5)
  10. ERROR ~ Error executing process > 'test (4)'
  11.  
  12. Caused by:
  13. Process `test (4)` terminated with an error exit status (1)
  14.  
  15. Command executed [/home/diogosilva/Diogo/Science/Tests/Nextflow/environment_issue/templates/test_script.py]:
  16.  
  17. #!/usr/bin/env python3
  18.  
  19.  
  20. from utils.base import var
  21.  
  22. print(var)
  23.  
  24. Command exit status:
  25. 1
  26.  
  27. Command output:
  28. (empty)
  29.  
  30. Command error:
  31. Traceback (most recent call last):
  32. File ".command.sh", line 4, in <module>
  33. from utils.base import var
  34. ImportError: No module named 'utils'
  35.  
  36. Work dir:
  37. /home/diogosilva/Diogo/Science/Tests/Nextflow/environment_issue/work/ca/b06143a3ffa473fc971c382f398485
  38.  
  39. Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
  40.  
  41. -- Check '.nextflow.log' file for details
  42. WARN: Killing pending tasks (4)
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement