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  1. struct functor_traits<std::binder2nd<T> >
  2. ^~~~~~~~~
  3. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  4. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  5. from src/utils/utils.h:44,
  6. from src/data.h:25,
  7. from src/analysisPermutation.cpp:17:
  8. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  9. class binder2nd
  10. ^~~~~~~~~
  11. In file included from lib/Eigen/Core:276:0,
  12. from lib/Eigen/Dense:1,
  13. from src/residualizer.h:20,
  14. from src/data.h:27,
  15. from src/analysisPermutation.cpp:17:
  16. lib/Eigen/src/Core/Functors.h:936:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
  17. struct functor_traits<std::binder1st<T> >
  18. ^~~~~~~~~
  19. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  20. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  21. from src/utils/utils.h:44,
  22. from src/data.h:25,
  23. from src/analysisPermutation.cpp:17:
  24. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:108:11: note: declared here
  25. class binder1st
  26. ^~~~~~~~~
  27. In file included from lib/Eigen/src/Core/MatrixBase.h:138:0,
  28. from lib/Eigen/Core:279,
  29. from lib/Eigen/Dense:1,
  30. from src/residualizer.h:20,
  31. from src/data.h:27,
  32. from src/analysisPermutation.cpp:17:
  33. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h:62:32: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
  34. inline const CwiseUnaryOp<std::binder1st<std::equal_to<Scalar> >, const Derived>
  35. ^~~~~~~~~
  36. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  37. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  38. from src/utils/utils.h:44,
  39. from src/data.h:25,
  40. from src/analysisPermutation.cpp:17:
  41. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:108:11: note: declared here
  42. class binder1st
  43. ^~~~~~~~~
  44. In file included from lib/Eigen/src/Core/MatrixBase.h:138:0,
  45. from lib/Eigen/Core:279,
  46. from lib/Eigen/Dense:1,
  47. from src/residualizer.h:20,
  48. from src/data.h:27,
  49. from src/analysisPermutation.cpp:17:
  50. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder1st<std::equal_to<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::MatrixBase<Derived>::cwiseEqual(const Scalar&) const':
  51. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h:65:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
  52. return CwiseUnaryOp<std::binder1st<std::equal_to<Scalar> >,const Derived>
  53. ^~~~~~~~~
  54. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  55. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  56. from src/utils/utils.h:44,
  57. from src/data.h:25,
  58. from src/analysisPermutation.cpp:17:
  59. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:108:11: note: declared here
  60. class binder1st
  61. ^~~~~~~~~
  62. In file included from lib/Eigen/Core:326:0,
  63. from lib/Eigen/Dense:1,
  64. from src/residualizer.h:20,
  65. from src/data.h:27,
  66. from src/analysisPermutation.cpp:17:
  67. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In member function 'void Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjugateLhs, ConjugateRhs>::operator()(Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjugateLhs, ConjugateRhs>::ResScalar*, Index, const LhsScalar*, const RhsScalar*, Index, Index, Index, Eigen::internal::gebp_kernel<LhsScalar, RhsScalar, Index, mr, nr, ConjugateLhs, ConjugateRhs>::ResScalar, Index, Index, Index, Index, RhsScalar*)':
  68. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:574:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  69. if(nr==4) traits.initAcc(C3);
  70. ^~
  71. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:575:19: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  72. traits.initAcc(C4);
  73. ^~~~~~
  74. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:946:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  75. if(nr==4) R3 = ploadu<ResPacket>(r3);
  76. ^~
  77. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:948:19: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  78. traits.acc(C0, alphav, R0);
  79. ^~~~~~
  80. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:951:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  81. if(nr==4) traits.acc(C3, alphav, R3);
  82. ^~
  83. lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:953:19: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  84. pstoreu(r0, R0);
  85. ^~~~~~~
  86. In file included from lib/Eigen/src/Core/ArrayBase.h:108:0,
  87. from lib/Eigen/Core:350,
  88. from lib/Eigen/Dense:1,
  89. from src/residualizer.h:20,
  90. from src/data.h:27,
  91. from src/analysisPermutation.cpp:17:
  92. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h: At global scope:
  93. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h:62:32: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
  94. inline const CwiseUnaryOp<std::binder1st<std::equal_to<Scalar> >, const Derived>
  95. ^~~~~~~~~
  96. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  97. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  98. from src/utils/utils.h:44,
  99. from src/data.h:25,
  100. from src/analysisPermutation.cpp:17:
  101. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:108:11: note: declared here
  102. class binder1st
  103. ^~~~~~~~~
  104. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  105. from lib/Eigen/Core:350,
  106. from lib/Eigen/Dense:1,
  107. from src/residualizer.h:20,
  108. from src/data.h:27,
  109. from src/analysisPermutation.cpp:17:
  110. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  111. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  112. ^
  113. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  114. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  115. ^~~~~~~~~
  116. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  117. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  118. from src/utils/utils.h:44,
  119. from src/data.h:25,
  120. from src/analysisPermutation.cpp:17:
  121. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  122. class binder2nd
  123. ^~~~~~~~~
  124. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  125. from lib/Eigen/Core:350,
  126. from lib/Eigen/Dense:1,
  127. from src/residualizer.h:20,
  128. from src/data.h:27,
  129. from src/analysisPermutation.cpp:17:
  130. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  131. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  132. ^
  133. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  134. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  135. ^~~~~~~~~
  136. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  137. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  138. from src/utils/utils.h:44,
  139. from src/data.h:25,
  140. from src/analysisPermutation.cpp:17:
  141. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  142. class binder2nd
  143. ^~~~~~~~~
  144. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  145. from lib/Eigen/Core:350,
  146. from lib/Eigen/Dense:1,
  147. from src/residualizer.h:20,
  148. from src/data.h:27,
  149. from src/analysisPermutation.cpp:17:
  150. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  151. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  152. ^
  153. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  154. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  155. ^~~~~~~~~
  156. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  157. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  158. from src/utils/utils.h:44,
  159. from src/data.h:25,
  160. from src/analysisPermutation.cpp:17:
  161. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  162. class binder2nd
  163. ^~~~~~~~~
  164. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  165. from lib/Eigen/Core:350,
  166. from lib/Eigen/Dense:1,
  167. from src/residualizer.h:20,
  168. from src/data.h:27,
  169. from src/analysisPermutation.cpp:17:
  170. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  171. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  172. ^
  173. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  174. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  175. ^~~~~~~~~
  176. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  177. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  178. from src/utils/utils.h:44,
  179. from src/data.h:25,
  180. from src/analysisPermutation.cpp:17:
  181. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  182. class binder2nd
  183. ^~~~~~~~~
  184. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  185. from lib/Eigen/Core:350,
  186. from lib/Eigen/Dense:1,
  187. from src/residualizer.h:20,
  188. from src/data.h:27,
  189. from src/analysisPermutation.cpp:17:
  190. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  191. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  192. ^
  193. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  194. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  195. ^~~~~~~~~
  196. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  197. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  198. from src/utils/utils.h:44,
  199. from src/data.h:25,
  200. from src/analysisPermutation.cpp:17:
  201. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  202. class binder2nd
  203. ^~~~~~~~~
  204. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  205. from lib/Eigen/Core:350,
  206. from lib/Eigen/Dense:1,
  207. from src/residualizer.h:20,
  208. from src/data.h:27,
  209. from src/analysisPermutation.cpp:17:
  210. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  211. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  212. ^
  213. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:190:34: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  214. inline const CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  215. ^~~~~~~~~
  216. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  217. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  218. from src/utils/utils.h:44,
  219. from src/data.h:25,
  220. from src/analysisPermutation.cpp:17:
  221. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  222. class binder2nd
  223. ^~~~~~~~~
  224. In file included from lib/Eigen/src/Core/ArrayBase.h:108:0,
  225. from lib/Eigen/Core:350,
  226. from lib/Eigen/Dense:1,
  227. from src/residualizer.h:20,
  228. from src/data.h:27,
  229. from src/analysisPermutation.cpp:17:
  230. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder1st<std::equal_to<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::cwiseEqual(const Scalar&) const':
  231. lib/Eigen/src/Core/../plugins/MatrixCwiseUnaryOps.h:65:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
  232. return CwiseUnaryOp<std::binder1st<std::equal_to<Scalar> >,const Derived>
  233. ^~~~~~~~~
  234. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  235. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  236. from src/utils/utils.h:44,
  237. from src/data.h:25,
  238. from src/analysisPermutation.cpp:17:
  239. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:108:11: note: declared here
  240. class binder1st
  241. ^~~~~~~~~
  242. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  243. from lib/Eigen/Core:350,
  244. from lib/Eigen/Dense:1,
  245. from src/residualizer.h:20,
  246. from src/data.h:27,
  247. from src/analysisPermutation.cpp:17:
  248. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder2nd<std::equal_to<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::operator==(const Scalar&) const':
  249. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  250. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  251. ^
  252. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  253. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  254. ^~~~~~~~~
  255. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  256. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  257. from src/utils/utils.h:44,
  258. from src/data.h:25,
  259. from src/analysisPermutation.cpp:17:
  260. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  261. class binder2nd
  262. ^~~~~~~~~
  263. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  264. from lib/Eigen/Core:350,
  265. from lib/Eigen/Dense:1,
  266. from src/residualizer.h:20,
  267. from src/data.h:27,
  268. from src/analysisPermutation.cpp:17:
  269. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder2nd<std::not_equal_to<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::operator!=(const Scalar&) const':
  270. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  271. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  272. ^
  273. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  274. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  275. ^~~~~~~~~
  276. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  277. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  278. from src/utils/utils.h:44,
  279. from src/data.h:25,
  280. from src/analysisPermutation.cpp:17:
  281. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  282. class binder2nd
  283. ^~~~~~~~~
  284. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  285. from lib/Eigen/Core:350,
  286. from lib/Eigen/Dense:1,
  287. from src/residualizer.h:20,
  288. from src/data.h:27,
  289. from src/analysisPermutation.cpp:17:
  290. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder2nd<std::less<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::operator<(const Scalar&) const':
  291. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  292. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  293. ^
  294. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  295. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  296. ^~~~~~~~~
  297. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  298. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  299. from src/utils/utils.h:44,
  300. from src/data.h:25,
  301. from src/analysisPermutation.cpp:17:
  302. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  303. class binder2nd
  304. ^~~~~~~~~
  305. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  306. from lib/Eigen/Core:350,
  307. from lib/Eigen/Dense:1,
  308. from src/residualizer.h:20,
  309. from src/data.h:27,
  310. from src/analysisPermutation.cpp:17:
  311. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder2nd<std::less_equal<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::operator<=(const Scalar&) const':
  312. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  313. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  314. ^
  315. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  316. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  317. ^~~~~~~~~
  318. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  319. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  320. from src/utils/utils.h:44,
  321. from src/data.h:25,
  322. from src/analysisPermutation.cpp:17:
  323. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  324. class binder2nd
  325. ^~~~~~~~~
  326. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  327. from lib/Eigen/Core:350,
  328. from lib/Eigen/Dense:1,
  329. from src/residualizer.h:20,
  330. from src/data.h:27,
  331. from src/analysisPermutation.cpp:17:
  332. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder2nd<std::greater<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::operator>(const Scalar&) const':
  333. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  334. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  335. ^
  336. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  337. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  338. ^~~~~~~~~
  339. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  340. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  341. from src/utils/utils.h:44,
  342. from src/data.h:25,
  343. from src/analysisPermutation.cpp:17:
  344. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  345. class binder2nd
  346. ^~~~~~~~~
  347. In file included from lib/Eigen/src/Core/ArrayBase.h:109:0,
  348. from lib/Eigen/Core:350,
  349. from lib/Eigen/Dense:1,
  350. from src/residualizer.h:20,
  351. from src/data.h:27,
  352. from src/analysisPermutation.cpp:17:
  353. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h: In member function 'const Eigen::CwiseUnaryOp<std::binder2nd<std::greater_equal<typename Eigen::internal::traits<T>::Scalar> >, const Derived> Eigen::ArrayBase<Derived>::operator>=(const Scalar&) const':
  354. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
  355. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  356. ^
  357. lib/Eigen/src/Core/../plugins/ArrayCwiseUnaryOps.h:192:30: note: in definition of macro 'EIGEN_MAKE_SCALAR_CWISE_UNARY_OP'
  358. return CwiseUnaryOp<std::binder2nd<FUNCTOR<Scalar> >, const Derived> \
  359. ^~~~~~~~~
  360. In file included from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/bits/stl_function.h:1127:0,
  361. from /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/string:48,
  362. from src/utils/utils.h:44,
  363. from src/data.h:25,
  364. from src/analysisPermutation.cpp:17:
  365. /theia/home/apps/CO7/skylake/software/GCCcore/7.3.0/include/c++/7.3.0/backward/binders.h:143:11: note: declared here
  366. class binder2nd
  367. ^~~~~~~~~
  368. In file included from lib/Eigen/Cholesky:24:0,
  369. from lib/Eigen/Dense:3,
  370. from src/residualizer.h:20,
  371. from src/data.h:27,
  372. from src/analysisPermutation.cpp:17:
  373. lib/Eigen/src/Cholesky/LDLT.h: In member function 'void Eigen::internal::solve_retval<Eigen::LDLT<MatrixType, _UpLo>, Rhs>::evalTo(Dest&) const':
  374. lib/Eigen/src/Cholesky/LDLT.h:505:39: warning: typedef 'Scalar' locally defined but not used [-Wunused-local-typedefs]
  375. typedef typename LDLTType::Scalar Scalar;
  376. ^~~~~~
  377. In file included from lib/Eigen/Core:277:0,
  378. from lib/Eigen/Dense:1,
  379. from src/residualizer.h:20,
  380. from src/data.h:27,
  381. from src/analysisPermutation.cpp:17:
  382. lib/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
  383. lib/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
  384. lib/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
  385. lib/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base<Eigen::Matrix<float, 4, 1>, float, float, false>'
  386. lib/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
  387. lib/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
  388. lib/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
  389. lib/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix<float, 4, 1>'
  390. lib/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion<float>'
  391. lib/Eigen/src/Geometry/arch/Geometry_SSE.h:22:3: required from here
  392. lib/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type {aka __vector(4) float}' [-Wignored-attributes]
  393. >::type PacketReturnType;
  394. ^~~~~~~~~~~~~~~~
  395. lib/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
  396. lib/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
  397. lib/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
  398. lib/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base<Eigen::Matrix<double, 4, 1>, double, double, false>'
  399. lib/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
  400. lib/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
  401. lib/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
  402. lib/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix<double, 4, 1>'
  403. lib/Eigen/src/Geometry/Quaternion.h:282:16: required from 'class Eigen::Quaternion<double>'
  404. lib/Eigen/src/Geometry/arch/Geometry_SSE.h:63:3: required from here
  405. lib/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
  406. lib/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
  407. lib/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
  408. lib/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
  409. lib/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base<Eigen::Matrix<double, -1, -1>, double, double, false>'
  410. lib/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
  411. lib/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
  412. lib/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
  413. lib/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix<double, -1, -1>'
  414. src/residualizer.h:35:14: required from here
  415. lib/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
  416. lib/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
  417. lib/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
  418. lib/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
  419. lib/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base<Eigen::Matrix<double, -1, 1>, double, double, false>'
  420. lib/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
  421. lib/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
  422. lib/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
  423. lib/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix<double, -1, 1>'
  424. lib/Eigen/src/QR/ColPivHouseholderQR.h:58:124: required from 'class Eigen::ColPivHouseholderQR<Eigen::Matrix<double, -1, -1> >'
  425. src/residualizer.h:38:38: required from here
  426. lib/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
  427. lib/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>':
  428. lib/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>'
  429. lib/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>'
  430. lib/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base<Eigen::Matrix<int, -1, 1>, int, int, false>'
  431. lib/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >'
  432. lib/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >'
  433. lib/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >'
  434. lib/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix<int, -1, 1>'
  435. lib/Eigen/src/Core/PermutationMatrix.h:74:13: required from 'class Eigen::PermutationBase<Eigen::PermutationMatrix<-1, -1, int> >'
  436. lib/Eigen/src/Core/PermutationMatrix.h:283:7: required from 'class Eigen::PermutationMatrix<-1, -1, int>'
  437. lib/Eigen/src/QR/ColPivHouseholderQR.h:62:45: required from 'class Eigen::ColPivHouseholderQR<Eigen::Matrix<double, -1, -1> >'
  438. src/residualizer.h:38:38: required from here
  439. lib/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}' [-Wignored-attributes]
  440. lib/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>':
  441. lib/Eigen/src/Core/DenseCoeffsBase.h:274:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>'
  442. lib/Eigen/src/Core/DenseCoeffsBase.h:636:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>'
  443. lib/Eigen/src/Core/util/XprHelper.h:371:8: required from 'struct Eigen::internal::special_scalar_op_base<Eigen::Matrix<double, 1, -1>, double, double, false>'
  444. lib/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >'
  445. lib/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >'
  446. lib/Eigen/src/Core/PlainObjectBase.h:88:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >'
  447. lib/Eigen/src/Core/Matrix.h:127:7: required from 'class Eigen::Matrix<double, 1, -1>'
  448. lib/Eigen/src/QR/ColPivHouseholderQR.h:391:19: required from 'class Eigen::ColPivHouseholderQR<Eigen::Matrix<double, -1, -1> >'
  449. src/residualizer.h:38:38: required from here
  450. lib/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
  451. In file included from src/analysisPermutation.cpp:17:0:
  452. src/data.h: In member function 'double data::getCorrelation(std::vector<float>&, std::vector<float>&)':
  453. src/data.h:170:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  454. case 3: sum0 += vec1[i+2] * vec2[i+2];
  455. src/data.h:171:2: note: here
  456. case 2: sum0 += vec1[i+1] * vec2[i+1];
  457. ^~~~
  458. src/data.h:171:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
  459. case 2: sum0 += vec1[i+1] * vec2[i+1];
  460. src/data.h:172:2: note: here
  461. case 1: sum0 += vec1[i+0] * vec2[i+0];
  462. ^~~~
  463. g++ -O3 obj/analysisPermutationPerGroup.o obj/management.o obj/analysisNominal.o obj/df.o obj/readInclusionsExclusions.o obj/commands.o obj/readCovariates.o obj/analysisPermutationInteraction.o obj/readPhenotypes.o obj/analysisPermutationSequence.o obj/readGenotypes.o obj/fastQTL.o obj/utils.o obj/tabix.o obj/residualizer.o obj/readInteractions.o obj/readThresholds.o obj/analysisMapping.o obj/mle.o obj/readGroups.o obj/analysisPermutation.o lib/Tabix/libtabix.a /tmp/smoors/ebinstall/8449/software/libRmath/3.6.0-foss-2018b/lib64/libRmath.a lib/Tabix/libtabix.a -lm -lz -lboost_iostreams -lboost_program_options -lgsl -lopenblas -lgfortran -o bin/fastQTL
  464. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int): error: undefined reference to 'boost::program_options::validation_error::get_template[abi:cxx11](boost::program_options::validation_error::kind_t)'
  465. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int): error: undefined reference to 'boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'
  466. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const: error: undefined reference to 'boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)'
  467. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*): error: undefined reference to 'boost::program_options::to_internal(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  468. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*): error: undefined reference to 'boost::program_options::detail::cmdline::cmdline(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)'
  469. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::typed_value<int, char>::name[abi:cxx11]() const: error: undefined reference to 'boost::program_options::arg[abi:cxx11]'
  470. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::typed_value<double, char>::name[abi:cxx11]() const: error: undefined reference to 'boost::program_options::arg[abi:cxx11]'
  471. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::typed_value<std::vector<int, std::allocator<int> >, char>::name[abi:cxx11]() const: error: undefined reference to 'boost::program_options::arg[abi:cxx11]'
  472. obj/fastQTL.o:fastQTL.cpp:function boost::program_options::typed_value<std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, char>::name() const: error: undefined reference to 'boost::program_options::arg[abi:cxx11]'
  473. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
  474. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
  475. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
  476. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
  477. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  478. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  479. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  480. obj/fastQTL.o:fastQTL.cpp:function main: error: undefined reference to 'boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  481. obj/fastQTL.o:fastQTL.cpp:function void boost::program_options::validate<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >*, int): error: undefined reference to 'boost::program_options::validate(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)'
  482. obj/fastQTL.o:fastQTL.cpp:function void boost::program_options::validate<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >*, int): error: undefined reference to 'boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  483. obj/fastQTL.o:fastQTL.cpp:function void boost::program_options::validate<double, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, double*, long): error: undefined reference to 'boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  484. obj/fastQTL.o:fastQTL.cpp:function void boost::program_options::validate<int, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, int*, long): error: undefined reference to 'boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  485. obj/fastQTL.o:fastQTL.cpp:function void boost::program_options::validate<int, char>(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::vector<int, std::allocator<int> >*, int): error: undefined reference to 'boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  486. obj/fastQTL.o:fastQTL.cpp:vtable for boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>: error: undefined reference to 'boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  487. obj/fastQTL.o:fastQTL.cpp:vtable for boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value> >: error: undefined reference to 'boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  488. obj/fastQTL.o:fastQTL.cpp:vtable for boost::exception_detail::error_info_injector<boost::program_options::validation_error>: error: undefined reference to 'boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  489. obj/fastQTL.o:fastQTL.cpp:vtable for boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error> >: error: undefined reference to 'boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  490. obj/fastQTL.o:fastQTL.cpp:vtable for boost::program_options::typed_value<int, char>: error: undefined reference to 'boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  491. obj/fastQTL.o:fastQTL.cpp:vtable for boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>: error: undefined reference to 'boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  492. obj/fastQTL.o:fastQTL.cpp:vtable for boost::program_options::typed_value<double, char>: error: undefined reference to 'boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  493. obj/fastQTL.o:fastQTL.cpp:vtable for boost::program_options::typed_value<std::vector<int, std::allocator<int> >, char>: error: undefined reference to 'boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  494. collect2: error: ld returned 1 exit status
  495. make: *** [bin/fastQTL] Error 1
  496. (at easybuild/tools/run.py:501 in parse_cmd_output)
  497. == 2019-06-13 09:25:24,183 easyblock.py:3050 WARNING build failed (first 300 chars): cmd " make -j 1 INCMATH=$EBROOTLIBRMATH/include LIB_MATH=$EBROOTLIBRMATH/lib64/libRmath.a LIB_BASE="-lm -lz -lboost_iostreams -lboost_program_options -lgsl $LIBBLAS"" exited with exit code 2 and output:
  498. g++ -O3 -D_FAST_CORRELATION -Wall -Wextra -Wno-sign-compare -o obj/analysisPermutationPerGroup.o
  499. == 2019-06-13 09:25:24,183 easyblock.py:294 INFO Closing log for application name FastQTL version 2.184
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